Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACJVC4_RS07435 Genome accession   NZ_CP177179
Coordinates   1619731..1621701 (-) Length   656 a.a.
NCBI ID   WP_037598293.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1614731..1626701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS07415 amiF 1615234..1616163 (-) 930 WP_037598289.1 ATP-binding cassette domain-containing protein Regulator
  ACJVC4_RS07420 amiE 1616156..1617241 (-) 1086 WP_002891435.1 ABC transporter ATP-binding protein Regulator
  ACJVC4_RS07425 amiD 1617251..1618177 (-) 927 WP_002891436.1 oligopeptide ABC transporter permease OppC Regulator
  ACJVC4_RS07430 amiC 1618177..1619670 (-) 1494 WP_002891437.1 ABC transporter permease Regulator
  ACJVC4_RS07435 amiA3 1619731..1621701 (-) 1971 WP_037598293.1 peptide ABC transporter substrate-binding protein Regulator
  ACJVC4_RS07440 amiA 1621883..1623853 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator
  ACJVC4_RS07445 pta 1624089..1625072 (-) 984 WP_037598296.1 phosphate acetyltransferase -
  ACJVC4_RS07450 - 1625088..1625984 (-) 897 WP_002891441.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72953.30 Da        Isoelectric Point: 5.0663

>NTDB_id=1085815 ACJVC4_RS07435 WP_037598293.1 1619731..1621701(-) (amiA3) [Streptococcus salivarius strain MRD-NRLLH]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTFNYVYNADPETLDYLISNKGSTIDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHYDGVKLSFFDGSDQEAQVRNFTDGAYSQARIYPTGSNFASVKKQYKDNIFYTQPSADIVGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSINFSINRESYSAQINGEEGGVLAVRNLLVKPDFVYAGDKSFGDLVTEKMASYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDMPVDQTAKTKVARAQSLKQSVEETLGKENVVVDLNQMSQDDLLN
ATLSAPNAAAEDWDITDSVAWAPDYEDPSTYLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVENAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1085815 ACJVC4_RS07435 WP_037598293.1 1619731..1621701(-) (amiA3) [Streptococcus salivarius strain MRD-NRLLH]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCGTCAAAATC
AAACACTTCAAGCAATACTTTTAACTATGTTTATAATGCTGATCCTGAGACATTGGACTACCTTATTTCCAATAAGGGTT
CAACAATTGATGCTGTGACAAATGGTGTCGATGGTCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTGCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTGACTTATACATACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCACTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTTAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATACTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTATGATGGGGTGAAATTGTCATTTTTCGATGGCTCTGATCAAGAGGCTCAAGTCCGTAATTTCACTGATGG
CGCCTATAGCCAAGCACGTATTTATCCAACAGGGTCGAACTTCGCCTCAGTAAAAAAACAATATAAAGATAATATTTTCT
ATACACAACCATCTGCTGATATTGTTGGTGTTGGTGTTAATATTGATCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGCCAATCTATTAACTTCTCAATTAATCGTGA
GTCATACTCAGCTCAAATTAATGGAGAAGAAGGGGGAGTTCTAGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTTGGTGATTTGGTAACTGAAAAGATGGCTTCTTACGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAACAAGGCTAAGGAAGCCCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTAGATATGCCAGTTGACCAAACAGCAAAGACAAAGGTGGCTCGTGCACAGTCTTTGA
AACAATCTGTTGAAGAGACACTCGGTAAAGAAAATGTTGTGGTTGACCTCAACCAAATGTCTCAAGATGACCTGTTGAAC
GCAACTCTTTCTGCTCCTAATGCAGCAGCAGAAGACTGGGATATTACTGACTCAGTTGCTTGGGCACCTGACTATGAAGA
CCCATCAACATACCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAATA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGAAAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTCAACAAGGG
GGCTGCGCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCTCGCGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

74.125

100

0.742
  amiA3 Streptococcus thermophilus LMG 18311

73.973

100

0.741
  amiA Streptococcus salivarius strain HSISS4

73.78

100

0.738

Multiple sequence alignment