Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ACJVC4_RS07430 Genome accession   NZ_CP177179
Coordinates   1618177..1619670 (-) Length   497 a.a.
NCBI ID   WP_002891437.1    Uniprot ID   J7TMU0
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613177..1624670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS07400 - 1613306..1613683 (+) 378 WP_002891430.1 GntR family transcriptional regulator -
  ACJVC4_RS07405 - 1613688..1614386 (+) 699 WP_002891431.1 ABC transporter ATP-binding protein -
  ACJVC4_RS07410 - 1614398..1615183 (+) 786 WP_037598283.1 hypothetical protein -
  ACJVC4_RS07415 amiF 1615234..1616163 (-) 930 WP_037598289.1 ATP-binding cassette domain-containing protein Regulator
  ACJVC4_RS07420 amiE 1616156..1617241 (-) 1086 WP_002891435.1 ABC transporter ATP-binding protein Regulator
  ACJVC4_RS07425 amiD 1617251..1618177 (-) 927 WP_002891436.1 oligopeptide ABC transporter permease OppC Regulator
  ACJVC4_RS07430 amiC 1618177..1619670 (-) 1494 WP_002891437.1 ABC transporter permease Regulator
  ACJVC4_RS07435 amiA3 1619731..1621701 (-) 1971 WP_037598293.1 peptide ABC transporter substrate-binding protein Regulator
  ACJVC4_RS07440 amiA 1621883..1623853 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55860.63 Da        Isoelectric Point: 10.0480

>NTDB_id=1085814 ACJVC4_RS07430 WP_002891437.1 1618177..1619670(-) (amiC) [Streptococcus salivarius strain MRD-NRLLH]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1085814 ACJVC4_RS07430 WP_002891437.1 1618177..1619670(-) (amiC) [Streptococcus salivarius strain MRD-NRLLH]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTATATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTGGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTACTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATACTTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTTAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGTCAAGGACAAACACAAAGTTCTGAGGTCAACTTCCCTACTGGTAAGAAGGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCGACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCCT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAATACCCTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAACGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TMU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.793

100

0.988
  amiC Streptococcus thermophilus LMG 18311

97.787

100

0.978
  amiC Streptococcus thermophilus LMD-9

97.787

100

0.978

Multiple sequence alignment