Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACJVC4_RS07425 Genome accession   NZ_CP177179
Coordinates   1617251..1618177 (-) Length   308 a.a.
NCBI ID   WP_002891436.1    Uniprot ID   J7TTY7
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1612251..1623177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS07395 - 1612330..1613124 (-) 795 WP_002891429.1 HAD-IIB family hydrolase -
  ACJVC4_RS07400 - 1613306..1613683 (+) 378 WP_002891430.1 GntR family transcriptional regulator -
  ACJVC4_RS07405 - 1613688..1614386 (+) 699 WP_002891431.1 ABC transporter ATP-binding protein -
  ACJVC4_RS07410 - 1614398..1615183 (+) 786 WP_037598283.1 hypothetical protein -
  ACJVC4_RS07415 amiF 1615234..1616163 (-) 930 WP_037598289.1 ATP-binding cassette domain-containing protein Regulator
  ACJVC4_RS07420 amiE 1616156..1617241 (-) 1086 WP_002891435.1 ABC transporter ATP-binding protein Regulator
  ACJVC4_RS07425 amiD 1617251..1618177 (-) 927 WP_002891436.1 oligopeptide ABC transporter permease OppC Regulator
  ACJVC4_RS07430 amiC 1618177..1619670 (-) 1494 WP_002891437.1 ABC transporter permease Regulator
  ACJVC4_RS07435 amiA3 1619731..1621701 (-) 1971 WP_037598293.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34621.76 Da        Isoelectric Point: 9.7054

>NTDB_id=1085813 ACJVC4_RS07425 WP_002891436.1 1617251..1618177(-) (amiD) [Streptococcus salivarius strain MRD-NRLLH]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGVLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1085813 ACJVC4_RS07425 WP_002891436.1 1617251..1618177(-) (amiD) [Streptococcus salivarius strain MRD-NRLLH]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAGAAGTCAACAACTGTCATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGTTTTATCTACCCAATGTTTTCAAAATTTGACTTTAATGATGTGTCTAAGGTTAATGACTTTAGTGTACGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACGGACAGTAATGGTAAGTCCCTCTTCGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTTATTGGTGTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTTACAGGGTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTATAACTTGGCTTCTCGTACACTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAACATCATGCCACAACTAGTGTCAGTTATCGTAACTATGGCTAGTCAGCTCTTGCCAGGATTTATTTCC
TACGAAGCCTTCCTTTCATACTTTGGTTTAGGGCTTCCTGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TTY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.701

100

0.987
  amiD Streptococcus thermophilus LMG 18311

96.429

100

0.964
  amiD Streptococcus thermophilus LMD-9

96.429

100

0.964

Multiple sequence alignment