Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACKTWR_RS03335 Genome accession   NZ_AP031304
Coordinates   630254..630718 (+) Length   154 a.a.
NCBI ID   WP_213430281.1    Uniprot ID   -
Organism   Paenibacillus melissococcoides strain J22TS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 625254..635718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTWR_RS03315 (PMJ22TS4_06570) - 625336..626541 (+) 1206 WP_261944490.1 IS4 family transposase -
  ACKTWR_RS03320 (PMJ22TS4_06580) - 626711..627598 (+) 888 WP_213430278.1 TnsD family Tn7-like transposition protein -
  ACKTWR_RS03325 (PMJ22TS4_06590) - 627807..628799 (+) 993 WP_213430279.1 PolC-type DNA polymerase III -
  ACKTWR_RS03330 (PMJ22TS4_06600) - 629739..630053 (+) 315 WP_213430280.1 hypothetical protein -
  ACKTWR_RS03335 (PMJ22TS4_06610) ssbA 630254..630718 (+) 465 WP_213430281.1 single-stranded DNA-binding protein Machinery gene
  ACKTWR_RS03340 (PMJ22TS4_06620) - 630902..631177 (+) 276 WP_213430282.1 hypothetical protein -
  ACKTWR_RS03345 (PMJ22TS4_06640) - 631545..632057 (+) 513 WP_213430283.1 hypothetical protein -
  ACKTWR_RS03350 (PMJ22TS4_06650) - 632308..633483 (+) 1176 WP_213430284.1 DNA polymerase III subunit beta -
  ACKTWR_RS03355 (PMJ22TS4_06660) - 633565..633921 (+) 357 WP_213430285.1 DUF6094 domain-containing protein -
  ACKTWR_RS03360 (PMJ22TS4_06670) - 634598..634795 (-) 198 WP_213430286.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17428.25 Da        Isoelectric Point: 5.2785

>NTDB_id=108570 ACKTWR_RS03335 WP_213430281.1 630254..630718(+) (ssbA) [Paenibacillus melissococcoides strain J22TS4]
MLNRVILIGRLVRDPELRYTPNGVAVTQMTLAVDRPFANGQGEREADFIPIVTWRQLAETCANYLRKGRLTAIEGRIQVR
HYDNNEGKRVYVTEVIADHVRFLESQNSRNGNGRGDQSGSGDAYSDSNQGNRNYQDPFRDDGKPIDISDDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=108570 ACKTWR_RS03335 WP_213430281.1 630254..630718(+) (ssbA) [Paenibacillus melissococcoides strain J22TS4]
ATGTTAAATCGTGTGATTTTGATTGGTCGTTTGGTTAGAGATCCAGAATTGAGATATACACCTAATGGAGTGGCCGTAAC
TCAAATGACGCTTGCAGTAGATCGTCCATTTGCCAACGGGCAGGGTGAACGTGAGGCTGATTTCATTCCGATTGTCACCT
GGCGACAGTTAGCAGAAACGTGTGCTAATTATCTTCGAAAAGGGCGTTTAACTGCAATAGAAGGACGGATTCAGGTTCGC
CATTATGATAATAACGAGGGGAAACGTGTATACGTGACAGAGGTGATTGCTGATCACGTACGCTTTCTAGAATCTCAAAA
TAGCAGAAATGGTAACGGACGTGGCGATCAAAGTGGTTCTGGAGATGCTTATTCTGATAGTAACCAGGGTAATAGAAACT
ATCAAGATCCGTTTCGAGATGACGGTAAACCGATAGATATCTCAGATGACGACTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

45.294

100

0.5
  ssb Neisseria gonorrhoeae MS11

34.884

100

0.39
  ssb Glaesserella parasuis strain SC1401

31.844

100

0.37
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

68.831

0.37

Multiple sequence alignment