Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLIMG_RS00695 Genome accession   NZ_CP177041
Coordinates   161270..162757 (-) Length   495 a.a.
NCBI ID   WP_411564107.1    Uniprot ID   -
Organism   Pseudomonas shirazensis strain MPB06     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 156270..167757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMG_RS00675 (ACLIMG_00675) - 156665..158752 (+) 2088 WP_411564104.1 FUSC family protein -
  ACLIMG_RS00680 (ACLIMG_00680) - 158749..158961 (+) 213 WP_101322650.1 DUF1656 domain-containing protein -
  ACLIMG_RS00685 (ACLIMG_00685) - 158958..159833 (+) 876 WP_411564105.1 efflux RND transporter periplasmic adaptor subunit -
  ACLIMG_RS00690 (ACLIMG_00690) - 159830..161248 (+) 1419 WP_411564106.1 efflux transporter outer membrane subunit -
  ACLIMG_RS00695 (ACLIMG_00695) comM 161270..162757 (-) 1488 WP_411564107.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLIMG_RS00700 (ACLIMG_00700) - 163083..163361 (-) 279 WP_411564108.1 accessory factor UbiK family protein -
  ACLIMG_RS00705 (ACLIMG_00705) glnK 163766..164104 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACLIMG_RS00710 (ACLIMG_00710) - 164153..165475 (+) 1323 WP_101322645.1 ammonium transporter -
  ACLIMG_RS00715 (ACLIMG_00715) sutA 165905..166228 (+) 324 WP_103435388.1 transcriptional regulator SutA -
  ACLIMG_RS00720 (ACLIMG_00720) - 166283..166978 (-) 696 WP_103435387.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52696.31 Da        Isoelectric Point: 7.7193

>NTDB_id=1085113 ACLIMG_RS00695 WP_411564107.1 161270..162757(-) (comM) [Pseudomonas shirazensis strain MPB06]
MSLALVHSRAQVGVEAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLNYPARRITQSLAPADLPKDGGR
YDLAIALGILAADAQVPVAQLSEIECLGELALSGAVRAVQGVLPAALAARDAGRALVVPRDNAEEASLASGLVVYAVAHL
QELVAHLNGQVPLAPYAANGLVLQSKPYPDLSEVQGQVAAKRTLLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGRTPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTELIQRYRNKLSGPLLDRIDLHLTVARESTVLTNQPSG
ETSASVAAVVAEARERQQRRQGCANAFLDLNGLRRYCGLSAGDQSWLENACERLTLSLRAAHRLLKVARTLADLEQLDNI
GRAHLAEALQYRPGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1085113 ACLIMG_RS00695 WP_411564107.1 161270..162757(-) (comM) [Pseudomonas shirazensis strain MPB06]
ATGTCCCTCGCCCTTGTTCACAGCCGCGCCCAGGTCGGCGTCGAGGCGCCTGCCGTCAGTGTCGAGACCCATCTCGCCAA
TGGCTTGCCCACGCTGACGCTGGTCGGCCTGCCGGAAACCACCGTCAAAGAGAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCGGGCCTGAATTACCCTGCCCGGCGTATCACCCAGAGCCTCGCCCCTGCCGACCTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATTGCCCTGGGCATTCTGGCGGCCGATGCGCAGGTGCCGGTTGCCCAGCTGAGCGAGATCGAGTGCCT
GGGCGAGTTGGCCTTGTCCGGTGCCGTGCGGGCGGTGCAGGGGGTGCTGCCGGCAGCGCTGGCGGCACGCGATGCCGGCC
GGGCACTGGTGGTGCCGCGGGACAATGCCGAGGAGGCGAGCCTGGCCAGTGGGCTGGTGGTGTATGCGGTTGCCCATCTG
CAGGAGCTGGTCGCTCACCTCAATGGTCAGGTGCCGTTGGCGCCTTATGCGGCCAATGGGTTGGTGCTGCAGAGCAAGCC
TTACCCGGATTTGAGCGAAGTGCAGGGCCAGGTGGCTGCCAAACGGACGCTACTGCTGGCGGCGGCGGGTGCCCACAATC
TGCTGTTCACCGGCCCGCCAGGCACCGGCAAGACCTTGCTCGCCAGCCGCTTGCCCGGCTTGCTGCCGCCGCTGGATGAA
CATGAGGCGCTGGAGGTGGCGGCGATTCAGTCGGTGAGCGGGCGTACTCCGTTGAACAGCTGGCCGCAGCGGCCGTTCCG
GCATCCGCATCACTCGGCCTCTGGGCCGGCCCTGGTGGGTGGCGGCAGTCGGCCGCAGCCGGGGGAGATCACCCTCGCCC
ACCACGGTGTGCTGTTTCTTGATGAACTACCTGAGTTCGAGCGGCGCGTGCTGGAGGTGTTGCGCGAGCCACTGGAGAGC
GGCGAGATCGTGGTGGCGCGGGCCAAGGACAAGGTACGCTTCCCTGCCCGCTTTCAGTTGGTGGCGGCAATGAACCCGTG
CCCCTGCGGCTACCTGGGTGACCCTACAGGGCGTTGTCGCTGCAGCACCGAACTGATCCAGCGTTACCGCAACAAGCTGT
CTGGGCCGCTACTCGATCGGATTGACCTGCACCTGACCGTGGCGCGGGAAAGCACAGTGCTGACCAACCAGCCCAGCGGC
GAAACCAGTGCCAGCGTTGCCGCAGTGGTGGCCGAGGCCCGTGAGCGCCAGCAACGCCGGCAGGGCTGCGCCAATGCATT
TCTCGACCTCAATGGCCTGCGCCGTTATTGCGGGTTGAGTGCCGGGGACCAGAGCTGGCTGGAGAACGCCTGCGAGCGCC
TGACCTTGTCACTGCGCGCGGCCCATCGGCTGCTCAAGGTGGCGCGGACCTTGGCTGATCTGGAGCAGCTGGACAACATC
GGCCGTGCGCATCTGGCCGAGGCGTTGCAGTACCGGCCAGGCTCGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.4

100

0.549
  comM Vibrio campbellii strain DS40M4

54.435

100

0.545
  comM Vibrio cholerae strain A1552

54.343

100

0.543
  comM Glaesserella parasuis strain SC1401

53.293

100

0.539
  comM Legionella pneumophila str. Paris

48.024

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.024

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.469

Multiple sequence alignment