Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLIMD_RS00695 Genome accession   NZ_CP177040
Coordinates   160636..162123 (-) Length   495 a.a.
NCBI ID   WP_103438671.1    Uniprot ID   -
Organism   Pseudomonas shirazensis strain MPB05     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 155636..167123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMD_RS00675 (ACLIMD_00675) - 156031..158118 (+) 2088 WP_411562415.1 FUSC family protein -
  ACLIMD_RS00680 (ACLIMD_00680) - 158115..158327 (+) 213 WP_101322650.1 DUF1656 domain-containing protein -
  ACLIMD_RS00685 (ACLIMD_00685) - 158324..159199 (+) 876 WP_186701436.1 HlyD family secretion protein -
  ACLIMD_RS00690 (ACLIMD_00690) - 159196..160614 (+) 1419 WP_150571427.1 efflux transporter outer membrane subunit -
  ACLIMD_RS00695 (ACLIMD_00695) comM 160636..162123 (-) 1488 WP_103438671.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLIMD_RS00700 (ACLIMD_00700) - 162234..162533 (-) 300 WP_103435389.1 accessory factor UbiK family protein -
  ACLIMD_RS00705 (ACLIMD_00705) glnK 162938..163276 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACLIMD_RS00710 (ACLIMD_00710) - 163325..164647 (+) 1323 WP_101322645.1 ammonium transporter -
  ACLIMD_RS00715 (ACLIMD_00715) sutA 165076..165399 (+) 324 WP_103435388.1 transcriptional regulator SutA -
  ACLIMD_RS00720 (ACLIMD_00720) - 165454..166149 (-) 696 WP_103435387.1 HAD family hydrolase -
  ACLIMD_RS00725 (ACLIMD_00725) xerC 166146..167045 (-) 900 WP_103435386.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52666.28 Da        Isoelectric Point: 7.7193

>NTDB_id=1085090 ACLIMD_RS00695 WP_103438671.1 160636..162123(-) (comM) [Pseudomonas shirazensis strain MPB05]
MSLALVHSRAQVGVEAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLNYPARRITQSLAPADLPKDGGR
YDLAIALGILAADAQVPVAQLSEIECLGELALSGAVRAVQGVLPAALAARDAGRALVVPRDNAEEASLASGLVVYAVAHL
QELVAHLNGQVPLAPYAANGLVLQSKPYPDLSEVQGQVAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGRTPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTELIQRYRNKLSGPLLDRIDLHLTVARESTVLTNQPSG
ETSASVAAVVAEARERQQRRQGCANAFLDLNGLRRYCGLSAGDQSWLENACERLTLSLRAAHRLLKVARTLADLEQLDNI
GRAHLAEALQYRPGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1085090 ACLIMD_RS00695 WP_103438671.1 160636..162123(-) (comM) [Pseudomonas shirazensis strain MPB05]
ATGTCCCTCGCCCTTGTTCACAGCCGCGCCCAGGTCGGCGTCGAGGCGCCTGCCGTCAGTGTCGAGACCCATCTCGCCAA
TGGCTTGCCCACGCTGACGCTGGTCGGCCTGCCGGAAACCACCGTCAAAGAGAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCGGGCCTGAATTACCCTGCCCGGCGTATCACCCAGAGCCTCGCCCCTGCCGACCTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATTGCCCTGGGCATTCTGGCGGCCGATGCGCAGGTGCCGGTTGCCCAGCTGAGCGAGATCGAGTGCCT
GGGCGAGTTGGCCTTGTCCGGTGCCGTGCGGGCGGTGCAGGGGGTACTGCCTGCAGCGCTGGCGGCACGCGATGCCGGCC
GGGCACTGGTGGTGCCGCGGGACAATGCCGAGGAGGCGAGCCTGGCCAGTGGGCTGGTGGTGTATGCGGTTGCCCATCTG
CAGGAGCTGGTCGCTCACCTCAATGGTCAGGTGCCGTTGGCGCCTTATGCGGCCAATGGGTTGGTGCTGCAGAGCAAGCC
TTACCCGGATTTGAGTGAAGTGCAGGGCCAGGTGGCTGCCAAACGGGCGCTACTGCTGGCGGCGGCGGGTGCCCACAATC
TGCTGTTCACCGGCCCGCCAGGCACCGGCAAGACCTTGCTCGCCAGCCGCTTGCCCGGCTTGCTGCCGCCGCTGGATGAA
CATGAGGCGCTGGAGGTGGCGGCGATTCAGTCGGTGAGCGGGCGTACTCCGTTGAACAGCTGGCCGCAGCGGCCGTTCCG
GCATCCGCATCACTCGGCCTCTGGGCCGGCCCTGGTGGGTGGCGGCAGTCGGCCGCAGCCGGGGGAGATCACCCTCGCCC
ACCACGGTGTGCTGTTTCTTGATGAACTACCTGAGTTCGAGCGGCGCGTGCTGGAGGTGTTGCGCGAGCCACTGGAGAGC
GGCGAGATCGTGGTGGCGCGGGCCAAGGACAAGGTACGCTTCCCTGCCCGCTTTCAGTTGGTGGCGGCAATGAACCCGTG
CCCCTGCGGCTACCTGGGTGACCCTACAGGGCGTTGTCGCTGCAGCACCGAACTGATCCAGCGTTACCGCAACAAGCTGT
CTGGGCCGCTACTCGATCGGATTGACCTGCACCTGACCGTGGCGCGGGAAAGCACAGTGCTGACCAACCAGCCCAGCGGC
GAAACCAGTGCCAGCGTTGCCGCAGTGGTGGCCGAGGCCCGTGAGCGCCAGCAACGCCGGCAGGGCTGCGCCAATGCATT
TCTCGACCTCAATGGCCTGCGCCGTTATTGCGGGTTGAGTGCCGGGGACCAGAGCTGGCTGGAGAACGCCTGCGAGCGCC
TGACCTTGTCACTGCGCGCGGCCCATCGGCTGCTCAAGGTGGCGCGGACCTTGGCTGATCTGGAGCAGCTGGACAACATC
GGCCGTGCGCATCTGGCCGAGGCGTTGCAGTACCGGCCAGGCTCGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.6

100

0.552
  comM Vibrio campbellii strain DS40M4

54.637

100

0.547
  comM Vibrio cholerae strain A1552

54.545

100

0.545
  comM Glaesserella parasuis strain SC1401

53.493

100

0.541
  comM Legionella pneumophila str. Paris

48.221

100

0.493
  comM Legionella pneumophila strain ERS1305867

48.221

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.414

100

0.471

Multiple sequence alignment