Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACKTY1_RS03000 | Genome accession | NZ_AP031292 |
| Coordinates | 586272..586736 (+) | Length | 154 a.a. |
| NCBI ID | WP_213430281.1 | Uniprot ID | - |
| Organism | Paenibacillus melissococcoides strain J11TS3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 581272..591736
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTY1_RS02980 (PMJ11TS3_05850) | - | 581354..582559 (+) | 1206 | WP_261944490.1 | IS4 family transposase | - |
| ACKTY1_RS02985 | - | 582729..583616 (+) | 888 | WP_213430278.1 | TnsD family Tn7-like transposition protein | - |
| ACKTY1_RS02990 (PMJ11TS3_05870) | - | 583825..584817 (+) | 993 | WP_213430279.1 | PolC-type DNA polymerase III | - |
| ACKTY1_RS02995 (PMJ11TS3_05880) | - | 585757..586071 (+) | 315 | WP_213430280.1 | hypothetical protein | - |
| ACKTY1_RS03000 (PMJ11TS3_05890) | ssbA | 586272..586736 (+) | 465 | WP_213430281.1 | single-stranded DNA-binding protein | Machinery gene |
| ACKTY1_RS03005 (PMJ11TS3_05900) | - | 586920..587195 (+) | 276 | WP_213430282.1 | hypothetical protein | - |
| ACKTY1_RS03010 (PMJ11TS3_05920) | - | 587563..588075 (+) | 513 | WP_213430283.1 | hypothetical protein | - |
| ACKTY1_RS03015 (PMJ11TS3_05930) | - | 588326..589501 (+) | 1176 | WP_213430284.1 | DNA polymerase III subunit beta | - |
| ACKTY1_RS03020 (PMJ11TS3_05940) | - | 589583..589939 (+) | 357 | WP_213430285.1 | DUF6094 domain-containing protein | - |
| ACKTY1_RS03025 (PMJ11TS3_05950) | - | 590616..590813 (-) | 198 | WP_213430286.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 17428.25 Da Isoelectric Point: 5.2785
>NTDB_id=108503 ACKTY1_RS03000 WP_213430281.1 586272..586736(+) (ssbA) [Paenibacillus melissococcoides strain J11TS3]
MLNRVILIGRLVRDPELRYTPNGVAVTQMTLAVDRPFANGQGEREADFIPIVTWRQLAETCANYLRKGRLTAIEGRIQVR
HYDNNEGKRVYVTEVIADHVRFLESQNSRNGNGRGDQSGSGDAYSDSNQGNRNYQDPFRDDGKPIDISDDDLPF
MLNRVILIGRLVRDPELRYTPNGVAVTQMTLAVDRPFANGQGEREADFIPIVTWRQLAETCANYLRKGRLTAIEGRIQVR
HYDNNEGKRVYVTEVIADHVRFLESQNSRNGNGRGDQSGSGDAYSDSNQGNRNYQDPFRDDGKPIDISDDDLPF
Nucleotide
Download Length: 465 bp
>NTDB_id=108503 ACKTY1_RS03000 WP_213430281.1 586272..586736(+) (ssbA) [Paenibacillus melissococcoides strain J11TS3]
ATGTTAAATCGTGTGATTTTGATTGGTCGTTTGGTTAGAGATCCAGAATTGAGATATACACCTAATGGAGTGGCCGTAAC
TCAAATGACGCTTGCAGTAGATCGTCCATTTGCCAACGGGCAGGGTGAACGTGAGGCTGATTTCATTCCGATTGTCACCT
GGCGACAGTTAGCAGAAACGTGTGCTAATTATCTTCGAAAAGGGCGTTTAACTGCAATAGAAGGACGGATTCAGGTTCGC
CATTATGATAATAACGAGGGGAAACGTGTATACGTGACAGAGGTGATTGCTGATCACGTACGCTTTCTAGAATCTCAAAA
TAGCAGAAATGGTAACGGACGTGGCGATCAAAGTGGTTCTGGAGATGCTTATTCTGATAGTAACCAGGGTAATAGAAACT
ATCAAGATCCGTTTCGAGATGACGGTAAACCGATAGATATCTCAGATGACGACTTGCCTTTTTAA
ATGTTAAATCGTGTGATTTTGATTGGTCGTTTGGTTAGAGATCCAGAATTGAGATATACACCTAATGGAGTGGCCGTAAC
TCAAATGACGCTTGCAGTAGATCGTCCATTTGCCAACGGGCAGGGTGAACGTGAGGCTGATTTCATTCCGATTGTCACCT
GGCGACAGTTAGCAGAAACGTGTGCTAATTATCTTCGAAAAGGGCGTTTAACTGCAATAGAAGGACGGATTCAGGTTCGC
CATTATGATAATAACGAGGGGAAACGTGTATACGTGACAGAGGTGATTGCTGATCACGTACGCTTTCTAGAATCTCAAAA
TAGCAGAAATGGTAACGGACGTGGCGATCAAAGTGGTTCTGGAGATGCTTATTCTGATAGTAACCAGGGTAATAGAAACT
ATCAAGATCCGTTTCGAGATGACGGTAAACCGATAGATATCTCAGATGACGACTTGCCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.604 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.294 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
34.884 |
100 |
0.39 |
| ssb | Glaesserella parasuis strain SC1401 |
31.844 |
100 |
0.37 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
53.774 |
68.831 |
0.37 |