Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLIMJ_RS32520 Genome accession   NZ_CP177034
Coordinates   7072591..7074108 (+) Length   505 a.a.
NCBI ID   WP_411220694.1    Uniprot ID   -
Organism   Pseudomonas veronii strain MPB10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7067591..7079108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMJ_RS32490 (ACLIMJ_32490) - 7068103..7068798 (+) 696 WP_017845174.1 HAD family hydrolase -
  ACLIMJ_RS32495 (ACLIMJ_32495) sutA 7068913..7069239 (-) 327 WP_017845175.1 transcriptional regulator SutA -
  ACLIMJ_RS32500 (ACLIMJ_32500) - 7069343..7069768 (-) 426 WP_017845176.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACLIMJ_RS32505 (ACLIMJ_32505) - 7069981..7071318 (-) 1338 WP_057004005.1 ammonium transporter -
  ACLIMJ_RS32510 (ACLIMJ_32510) glnK 7071352..7071690 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACLIMJ_RS32515 (ACLIMJ_32515) - 7072113..7072376 (+) 264 WP_017845178.1 accessory factor UbiK family protein -
  ACLIMJ_RS32520 (ACLIMJ_32520) comM 7072591..7074108 (+) 1518 WP_411220694.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLIMJ_RS32525 (ACLIMJ_32525) glyA 7074119..7075384 (-) 1266 WP_411220695.1 serine hydroxymethyltransferase -
  ACLIMJ_RS32530 (ACLIMJ_32530) - 7075410..7076225 (-) 816 WP_046381660.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACLIMJ_RS32535 (ACLIMJ_32535) - 7076222..7077463 (-) 1242 WP_057004012.1 benzoate/H(+) symporter BenE family transporter -
  ACLIMJ_RS32540 (ACLIMJ_32540) - 7077606..7079105 (+) 1500 WP_411220696.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54088.23 Da        Isoelectric Point: 8.1032

>NTDB_id=1084969 ACLIMJ_RS32520 WP_411220694.1 7072591..7074108(+) (comM) [Pseudomonas veronii strain MPB10]
MSLAIVHSRAQIGVEAPAVSVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTQMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRSVIVPRANVEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPFKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
HEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGDPSARCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREITALNPAPQP
GDNTSTASALVAQARDRQQQRQGCANAFLDLPGLRQHCALSRPDEAWLESACERLTLSLRAAHRLLKVARTLADLEHTDS
IRRSHIAEALQYRPSASSQVDSANV

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1084969 ACLIMJ_RS32520 WP_411220694.1 7072591..7074108(+) (comM) [Pseudomonas veronii strain MPB10]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGATCGGCGTCGAAGCCCCTGCCGTCAGCGTCGAAGTACACATGGCCAA
TGGTCTGCCATCGCTCACCTTGGTGGGTTTGCCGGAAACCGCCGTCAAGGAAAGCAAGGACCGCGTGCGCAGTGCCATCC
TCAACTCCGCGCTGCAATACCCGTCCCGCCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATAGCCCTCGGGATTCTCGCGGCGAGCGTGCAGGTGCCGACGCAGATGCTCGACGACGTGGAATGCCT
GGGGGAATTGGCGCTATCGGGCGAGGTACGCGCAGTGAAAGGTGTGTTGCCGGCAGCGCTCGCGGCGCGCAAGGCCGGGC
GCAGCGTGATCGTGCCCCGGGCGAATGTCGAAGAGGCCTGCCTGGCATCGGGGTTGAAGGTGATTGCGGTGGACCACCTG
CTACAGGTGGTGGCGCACCTGAATGGGCATGTGCCGATCGAGCCCTTCAAGTCCGACGGTCTGCTGTACTTGAACAAACC
TTACCCGGACCTCAGCGAAGTCCAGGGCCAACTCGCCGCCAAACGCGCACTGCTGATCGCTGCGGCAGGCGCGCATAACC
TGTTGTTCAGCGGCCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGTTTGCTGCCGCCGCTGAGTGAG
CACGAAGCGCTGGAAGTGGCAGCGATTCAATCAGTGGTCAGCCTGGCGCCCCTGAGTCATTGGCCCCATCGGCCGTTTCG
CCAGCCGCACCATTCGGCCTCCGGCCCGGCGCTGGTGGGTGGAGGGTCAAAGCCGCAACCGGGGGAAATCACCTTGGCCC
ACCATGGCGTGCTGTTCCTGGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTCGAGGTTTTGCGCGAGCCACTGGAGTCG
GGGCATATCGTGATCTCCCGCGCCCGCGACCGCGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCCGCAATGAACCCCTG
CCCTTGCGGTTACATGGGCGACCCCAGCGCGCGCTGTCGCTGTACGCCGGAGCAGGTCCAGCGCTATCGCAACAAACTCT
CCGGGCCGTTGCTGGACCGGATCGACCTGCACCTGACCGTCGCTCGCGAAATCACCGCGCTGAACCCGGCCCCGCAGCCC
GGCGACAACACGTCCACCGCCTCGGCACTGGTAGCCCAGGCCCGGGACCGCCAGCAACAGCGCCAGGGCTGCGCCAATGC
GTTCCTCGACCTACCGGGGTTGCGCCAGCATTGCGCGCTGTCGAGGCCGGATGAAGCCTGGCTGGAAAGCGCCTGCGAGC
GCCTGACCCTGTCCCTTCGCGCGGCCCACCGCCTGCTCAAGGTCGCCCGCACGCTGGCGGATCTGGAACACACAGACAGC
ATCCGCCGCAGCCACATCGCCGAAGCCCTGCAATACCGCCCCTCAGCCTCCAGTCAGGTCGACAGCGCCAACGTTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.758

98.02

0.547
  comM Glaesserella parasuis strain SC1401

54.89

99.208

0.545
  comM Vibrio cholerae strain A1552

55.152

98.02

0.541
  comM Haemophilus influenzae Rd KW20

53.2

99.01

0.527
  comM Legionella pneumophila str. Paris

50.403

98.218

0.495
  comM Legionella pneumophila strain ERS1305867

50.403

98.218

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

99.802

0.461

Multiple sequence alignment