Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH39_RS14410 Genome accession   NZ_AP029060
Coordinates   3026636..3028138 (+) Length   500 a.a.
NCBI ID   WP_338620458.1    Uniprot ID   -
Organism   Paludibacterium sp. THUN1379     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3021636..3033138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH39_RS14380 (THUN1379_28090) - 3022257..3023012 (+) 756 WP_215778357.1 cytochrome c1 -
  AACH39_RS14385 (THUN1379_28100) - 3023167..3023769 (+) 603 WP_215778355.1 glutathione S-transferase N-terminal domain-containing protein -
  AACH39_RS14390 (THUN1379_28110) - 3023779..3024225 (+) 447 WP_215778352.1 ClpXP protease specificity-enhancing factor -
  AACH39_RS14395 (THUN1379_28120) - 3024337..3025647 (-) 1311 WP_215778350.1 ammonium transporter -
  AACH39_RS14400 (THUN1379_28130) glnK 3025671..3026009 (-) 339 WP_133679525.1 P-II family nitrogen regulator -
  AACH39_RS14405 (THUN1379_28140) - 3026367..3026627 (+) 261 WP_338620457.1 accessory factor UbiK family protein -
  AACH39_RS14410 (THUN1379_28150) comM 3026636..3028138 (+) 1503 WP_338620458.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH39_RS14415 (THUN1379_28160) - 3028210..3028923 (+) 714 WP_252346091.1 SPOR domain-containing protein -
  AACH39_RS14420 (THUN1379_28170) - 3028986..3029603 (+) 618 WP_338620459.1 thiol:disulfide interchange protein DsbA/DsbL -
  AACH39_RS14425 (THUN1379_28180) - 3029663..3030484 (+) 822 WP_215778339.1 undecaprenyl-diphosphate phosphatase -
  AACH39_RS14435 (THUN1379_28190) purB 3030833..3032203 (-) 1371 WP_215778337.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52999.43 Da        Isoelectric Point: 8.3122

>NTDB_id=108353 AACH39_RS14410 WP_338620458.1 3026636..3028138(+) (comM) [Paludibacterium sp. THUN1379]
MKLAVVHSRALDGADAPDVEVEVHLSAGLPAFHIVGLPDTEVKESRDRVRSAIQTSGFEFPASKIIVSLAPADLPKASGR
FDLPIALGILAASGQLLAAPLARHEFAGELGLSGQLRPVRGALAMACHAARAARCLVLPTASAAEAALVPGVQVLQADSL
LQVCAHLNGVQALSIAEAKSPPCGRLLPDLAEVRGQGVARHALELAAAGGHSLLMIGAPGCGKSMLAARLPGILPVMSEA
EALECAALHSLSSQGFDPADWRQRPFRAPHHGSSVAALVGGGSVPRPGEITLAHHGVLFLDEMPEFERRALEALREPMET
GVVHLARAARRFSFPARFQLVAAMNPCPCGYAGDVSGRCLCSPEQISRYRGKISGPLLDRIDMQVEMAGHTPAELLQNGP
GEGSALVLQRVQMARERQLHRQGKVNAFLTAGELERYCRVETGLLEFLAELLGRLHLSARALHRTLRLALTLADLAGLAK
VGRAQVLQAVQLRRQTFARQ

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=108353 AACH39_RS14410 WP_338620458.1 3026636..3028138(+) (comM) [Paludibacterium sp. THUN1379]
ATGAAGCTCGCCGTGGTGCATAGTCGGGCGCTGGATGGTGCGGATGCGCCCGACGTGGAAGTGGAAGTGCATCTTTCAGC
GGGGTTGCCCGCTTTTCATATCGTTGGTTTGCCTGATACCGAGGTCAAGGAGAGTCGCGACAGGGTCCGCAGCGCGATTC
AGACCTCCGGCTTTGAATTTCCCGCCAGCAAGATCATCGTCAGCCTGGCGCCGGCTGACCTGCCCAAGGCCTCCGGCCGT
TTCGATCTGCCGATTGCGCTGGGCATCCTGGCCGCTTCCGGCCAACTGCTGGCAGCGCCACTTGCCCGGCATGAGTTCGC
CGGCGAGCTGGGGCTGTCCGGGCAGTTGCGGCCGGTGCGCGGTGCGCTGGCGATGGCCTGTCATGCGGCCCGTGCTGCAC
GTTGCCTGGTGCTGCCCACGGCCAGTGCGGCCGAGGCGGCACTGGTGCCCGGCGTGCAGGTTTTGCAGGCAGACAGCCTG
CTGCAGGTCTGTGCGCATCTCAATGGTGTGCAGGCGCTGAGTATCGCCGAGGCGAAGTCTCCGCCGTGTGGTCGTTTGCT
GCCGGATCTTGCCGAGGTTCGCGGGCAGGGCGTTGCCCGTCATGCTCTCGAACTGGCGGCGGCTGGGGGCCACAGCCTGC
TGATGATCGGGGCGCCGGGCTGTGGCAAGAGCATGCTGGCGGCGCGTTTGCCCGGTATTCTGCCCGTGATGAGCGAAGCG
GAGGCGCTGGAGTGTGCTGCGCTGCATTCCCTCAGCTCGCAGGGCTTCGATCCGGCGGACTGGCGCCAGCGTCCCTTTCG
CGCCCCGCATCATGGCAGTTCTGTCGCGGCGCTGGTGGGGGGCGGCAGCGTGCCCAGACCGGGGGAAATCACGCTGGCGC
ATCATGGGGTGCTGTTCCTGGATGAAATGCCCGAGTTCGAACGACGGGCTCTGGAGGCGCTGCGCGAGCCCATGGAGACC
GGGGTGGTCCATCTGGCGCGCGCCGCACGCCGTTTCTCCTTCCCGGCCCGTTTTCAGCTGGTGGCGGCCATGAATCCCTG
CCCCTGTGGCTATGCCGGGGATGTCTCGGGAAGATGTCTGTGTTCGCCTGAGCAAATTTCGCGTTATCGCGGTAAAATCT
CCGGCCCCCTGCTGGATCGTATCGACATGCAGGTGGAAATGGCGGGGCACACGCCTGCCGAGCTGTTGCAAAACGGCCCG
GGAGAAGGGTCCGCCCTCGTGCTGCAGCGTGTGCAGATGGCGCGTGAGCGTCAACTGCATCGCCAGGGCAAGGTGAATGC
TTTTTTGACGGCAGGTGAACTTGAGCGCTATTGCCGTGTCGAAACCGGTTTGCTTGAGTTTCTTGCTGAGTTGTTGGGGC
GACTGCATCTGTCTGCACGCGCCTTGCATCGAACCTTGCGTCTGGCGCTGACCCTGGCCGATCTGGCCGGGTTGGCAAAG
GTTGGTCGCGCGCAGGTGTTGCAGGCCGTGCAACTGAGGAGGCAGACCTTCGCGCGGCAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.722

99.4

0.534
  comM Vibrio campbellii strain DS40M4

51.807

99.6

0.516
  comM Haemophilus influenzae Rd KW20

48.6

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.207

100

0.484
  comM Legionella pneumophila str. Paris

48.207

100

0.484
  comM Glaesserella parasuis strain SC1401

47.2

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.837

100

0.41

Multiple sequence alignment