Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | ACLINX_RS12225 | Genome accession | NZ_CP176876 |
| Coordinates | 2649613..2651109 (+) | Length | 498 a.a. |
| NCBI ID | WP_243353035.1 | Uniprot ID | - |
| Organism | Pseudomonas orientalis strain MPB27 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2631229..2672586 | 2649613..2651109 | within | 0 |
Gene organization within MGE regions
Location: 2631229..2672586
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLINX_RS12125 (ACLINX_12125) | - | 2632274..2633020 (-) | 747 | WP_181285977.1 | LytR/AlgR family response regulator transcription factor | - |
| ACLINX_RS12130 (ACLINX_12130) | argH | 2633522..2634916 (+) | 1395 | WP_181285978.1 | argininosuccinate lyase | - |
| ACLINX_RS12135 (ACLINX_12135) | - | 2635332..2635991 (-) | 660 | WP_411565928.1 | glutathione S-transferase family protein | - |
| ACLINX_RS12140 (ACLINX_12140) | - | 2636116..2636400 (+) | 285 | WP_181283396.1 | hypothetical protein | - |
| ACLINX_RS12145 (ACLINX_12145) | - | 2636496..2636750 (+) | 255 | WP_032894567.1 | TIGR02647 family protein | - |
| ACLINX_RS12150 (ACLINX_12150) | - | 2636918..2639758 (+) | 2841 | WP_191956189.1 | class I adenylate cyclase | - |
| ACLINX_RS12155 (ACLINX_12155) | rnk | 2639755..2640168 (-) | 414 | WP_076952006.1 | nucleoside diphosphate kinase regulator | - |
| ACLINX_RS12160 (ACLINX_12160) | - | 2640300..2640518 (-) | 219 | WP_181283394.1 | DUF1289 domain-containing protein | - |
| ACLINX_RS12165 (ACLINX_12165) | cyaY | 2640521..2640853 (-) | 333 | WP_124360307.1 | iron donor protein CyaY | - |
| ACLINX_RS12170 (ACLINX_12170) | lptM | 2641092..2641259 (+) | 168 | WP_003195417.1 | LPS translocon maturation chaperone LptM | - |
| ACLINX_RS12175 (ACLINX_12175) | lysA | 2641269..2642516 (+) | 1248 | WP_191952519.1 | diaminopimelate decarboxylase | - |
| ACLINX_RS12180 (ACLINX_12180) | dapF | 2642520..2643350 (+) | 831 | WP_191952518.1 | diaminopimelate epimerase | - |
| ACLINX_RS12185 (ACLINX_12185) | - | 2643364..2644080 (+) | 717 | WP_057723341.1 | DUF484 family protein | - |
| ACLINX_RS12190 (ACLINX_12190) | xerC | 2644083..2644982 (+) | 900 | WP_181283391.1 | tyrosine recombinase XerC | - |
| ACLINX_RS12195 (ACLINX_12195) | - | 2644979..2645674 (+) | 696 | WP_181283390.1 | HAD family hydrolase | - |
| ACLINX_RS12200 (ACLINX_12200) | sutA | 2645865..2646197 (-) | 333 | WP_169374915.1 | transcriptional regulator SutA | - |
| ACLINX_RS12205 (ACLINX_12205) | - | 2646299..2646724 (-) | 426 | WP_181283389.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ACLINX_RS12210 (ACLINX_12210) | - | 2646935..2648272 (-) | 1338 | WP_010207459.1 | ammonium transporter | - |
| ACLINX_RS12215 (ACLINX_12215) | glnK | 2648308..2648646 (-) | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
| ACLINX_RS12220 (ACLINX_12220) | - | 2649068..2649331 (+) | 264 | WP_003195432.1 | accessory factor UbiK family protein | - |
| ACLINX_RS12225 (ACLINX_12225) | comM | 2649613..2651109 (+) | 1497 | WP_243353035.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| ACLINX_RS12230 (ACLINX_12230) | - | 2651136..2653112 (-) | 1977 | WP_411565929.1 | methyl-accepting chemotaxis protein | - |
| ACLINX_RS12235 (ACLINX_12235) | - | 2653291..2654211 (-) | 921 | WP_191952515.1 | LysR substrate-binding domain-containing protein | - |
| ACLINX_RS12240 (ACLINX_12240) | - | 2654363..2655766 (+) | 1404 | WP_191952514.1 | NorM family multidrug efflux MATE transporter | - |
| ACLINX_RS12245 (ACLINX_12245) | - | 2655895..2657559 (-) | 1665 | WP_411565930.1 | putative bifunctional diguanylate cyclase/phosphodiesterase | - |
| ACLINX_RS12250 (ACLINX_12250) | rep | 2657826..2659835 (+) | 2010 | WP_124360318.1 | DNA helicase Rep | - |
| ACLINX_RS12255 (ACLINX_12255) | - | 2659894..2660463 (+) | 570 | WP_003176890.1 | xanthine phosphoribosyltransferase | - |
| ACLINX_RS12260 (ACLINX_12260) | - | 2660588..2662510 (-) | 1923 | WP_411565931.1 | acetyl-CoA hydrolase/transferase C-terminal domain-containing protein | - |
| ACLINX_RS12265 (ACLINX_12265) | - | 2662647..2663063 (-) | 417 | WP_181283398.1 | c-type cytochrome | - |
| ACLINX_RS12270 (ACLINX_12270) | - | 2663244..2663792 (-) | 549 | WP_003176893.1 | cupin domain-containing protein | - |
| ACLINX_RS12275 (ACLINX_12275) | alr | 2663909..2664982 (-) | 1074 | WP_181283382.1 | alanine racemase | - |
| ACLINX_RS12280 (ACLINX_12280) | - | 2665060..2665413 (-) | 354 | WP_181283381.1 | RidA family protein | - |
| ACLINX_RS12285 (ACLINX_12285) | dadA | 2665385..2666686 (-) | 1302 | WP_191956183.1 | D-amino acid dehydrogenase | - |
| ACLINX_RS12290 (ACLINX_12290) | - | 2666843..2667331 (+) | 489 | WP_003176896.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| ACLINX_RS12295 (ACLINX_12295) | - | 2667531..2667884 (-) | 354 | WP_243353036.1 | YkgJ family cysteine cluster protein | - |
| ACLINX_RS12300 (ACLINX_12300) | - | 2667998..2669290 (+) | 1293 | WP_411565932.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACLINX_RS12305 (ACLINX_12305) | - | 2669292..2669516 (-) | 225 | WP_124360326.1 | DUF1127 domain-containing protein | - |
| ACLINX_RS12310 (ACLINX_12310) | - | 2669683..2671107 (+) | 1425 | WP_411566767.1 | PLP-dependent aminotransferase family protein | - |
Sequence
Protein
Download Length: 498 a.a. Molecular weight: 53483.71 Da Isoelectric Point: 8.0906
>NTDB_id=1083498 ACLINX_RS12225 WP_243353035.1 2649613..2651109(+) (comM) [Pseudomonas orientalis strain MPB27]
MSLAIVHSRAQVGVEAPVVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLMVPRANAEEACLASGLKVIAVDHL
LQAVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREATALSPAQQT
DDTTAKSAALVADARERQQRRQGCANAFLDLPGLREYCTLAKVDESWLENACERLTLSLRAAHRLLKVARTLADLEQKDA
IARHHLQEALQYRPAASS
MSLAIVHSRAQVGVEAPVVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLMVPRANAEEACLASGLKVIAVDHL
LQAVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREATALSPAQQT
DDTTAKSAALVADARERQQRRQGCANAFLDLPGLREYCTLAKVDESWLENACERLTLSLRAAHRLLKVARTLADLEQKDA
IARHHLQEALQYRPAASS
Nucleotide
Download Length: 1497 bp
>NTDB_id=1083498 ACLINX_RS12225 WP_243353035.1 2649613..2651109(+) (comM) [Pseudomonas orientalis strain MPB27]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCCGTCGTCACTGTCGAAGTGCACATGGCCAA
TGGGCTGCCGTCGCTGACGCTGGTGGGCTTGCCGGAAACCGCGGTAAAGGAAAGCAAGGACCGCGTACGCAGCGCCATTC
TCAATTCGGCCCTGCAATACCCGGCGCGGCGCATCACACTCAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTCGATCTGGCGATTGCACTGGGAATCCTGGCGGCCAGCGTGCAAGTGCCGGCGTTGATGCTCGATGATGTCGAGTGCCT
GGGGGAGTTGGCGCTGTCCGGCGAAGTACGCGCGGTGAAAGGCGTGTTGCCGGCCGCTTTGGCGGCGCGCAAGGCCGGGC
GCACCTTGATGGTGCCCAGGGCAAACGCTGAAGAAGCGTGCCTGGCATCAGGATTGAAGGTGATTGCGGTGGACCACTTG
CTGCAGGCGGTGGCGCACTTGAATGGGCATGTGCCGATCGAGCCCTACCGGTCGGACGGCTTGCTGTATCTGAACAAACC
TTACCCGGACCTCAGTGAAGTCCAGGGCCAACTGGCAGCCAAGCGCGCCTTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGTTCAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGGTTGCTGCCACCGCTCAGTGAG
CAGGAAGCGCTGGAGGTTGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGTTGAGCCATTGGCCGCACCGGCCGTTTCG
CCAGCCGCACCATTCGGCATCCGGCCCTGCGCTGGTGGGTGGCGGGTCAAAGCCGCAACCAGGGGAGATTACGCTGGCCC
ATCACGGCGTGCTGTTCCTGGATGAGTTGCCGGAATTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTCGAATCA
GGGCATATCGTAATTTCCCGCGCCCGTGACCGAGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCCGCGATGAACCCTTG
CCCTTGCGGCTATATGGGCGAACCCAGCGGCCGTTGCCGGTGTACACCGGAACAGGTCCAGCGCTATCGCAACAAGCTTT
CCGGGCCGTTGCTGGACCGGATCGATCTGCACCTGACGGTGGCCCGGGAAGCCACGGCGCTGAGCCCGGCACAACAGACC
GATGACACCACCGCGAAATCGGCGGCGCTGGTGGCCGATGCGCGGGAACGCCAGCAACGACGCCAGGGCTGCGCCAACGC
ATTCCTCGACCTGCCGGGGCTGCGCGAATACTGCACGCTGGCGAAGGTCGATGAAAGTTGGCTGGAAAACGCCTGCGAGC
GGCTGACGCTTTCGTTGCGGGCGGCCCATCGCTTGCTCAAGGTGGCGCGTACACTGGCCGACCTGGAACAGAAAGACGCC
ATCGCTCGCCACCATCTGCAAGAGGCGTTGCAATACCGCCCGGCGGCGAGCTCTTGA
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCCGTCGTCACTGTCGAAGTGCACATGGCCAA
TGGGCTGCCGTCGCTGACGCTGGTGGGCTTGCCGGAAACCGCGGTAAAGGAAAGCAAGGACCGCGTACGCAGCGCCATTC
TCAATTCGGCCCTGCAATACCCGGCGCGGCGCATCACACTCAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTCGATCTGGCGATTGCACTGGGAATCCTGGCGGCCAGCGTGCAAGTGCCGGCGTTGATGCTCGATGATGTCGAGTGCCT
GGGGGAGTTGGCGCTGTCCGGCGAAGTACGCGCGGTGAAAGGCGTGTTGCCGGCCGCTTTGGCGGCGCGCAAGGCCGGGC
GCACCTTGATGGTGCCCAGGGCAAACGCTGAAGAAGCGTGCCTGGCATCAGGATTGAAGGTGATTGCGGTGGACCACTTG
CTGCAGGCGGTGGCGCACTTGAATGGGCATGTGCCGATCGAGCCCTACCGGTCGGACGGCTTGCTGTATCTGAACAAACC
TTACCCGGACCTCAGTGAAGTCCAGGGCCAACTGGCAGCCAAGCGCGCCTTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGTTCAGCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGGTTGCTGCCACCGCTCAGTGAG
CAGGAAGCGCTGGAGGTTGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGTTGAGCCATTGGCCGCACCGGCCGTTTCG
CCAGCCGCACCATTCGGCATCCGGCCCTGCGCTGGTGGGTGGCGGGTCAAAGCCGCAACCAGGGGAGATTACGCTGGCCC
ATCACGGCGTGCTGTTCCTGGATGAGTTGCCGGAATTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTCGAATCA
GGGCATATCGTAATTTCCCGCGCCCGTGACCGAGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCCGCGATGAACCCTTG
CCCTTGCGGCTATATGGGCGAACCCAGCGGCCGTTGCCGGTGTACACCGGAACAGGTCCAGCGCTATCGCAACAAGCTTT
CCGGGCCGTTGCTGGACCGGATCGATCTGCACCTGACGGTGGCCCGGGAAGCCACGGCGCTGAGCCCGGCACAACAGACC
GATGACACCACCGCGAAATCGGCGGCGCTGGTGGCCGATGCGCGGGAACGCCAGCAACGACGCCAGGGCTGCGCCAACGC
ATTCCTCGACCTGCCGGGGCTGCGCGAATACTGCACGCTGGCGAAGGTCGATGAAAGTTGGCTGGAAAACGCCTGCGAGC
GGCTGACGCTTTCGTTGCGGGCGGCCCATCGCTTGCTCAAGGTGGCGCGTACACTGGCCGACCTGGAACAGAAAGACGCC
ATCGCTCGCCACCATCTGCAAGAGGCGTTGCAATACCGCCCGGCGGCGAGCTCTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
56.162 |
99.398 |
0.558 |
| comM | Vibrio cholerae strain A1552 |
55.556 |
99.398 |
0.552 |
| comM | Glaesserella parasuis strain SC1401 |
54.491 |
100 |
0.548 |
| comM | Haemophilus influenzae Rd KW20 |
54 |
100 |
0.542 |
| comM | Legionella pneumophila str. Paris |
50.403 |
99.598 |
0.502 |
| comM | Legionella pneumophila strain ERS1305867 |
50.403 |
99.598 |
0.502 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
45.957 |
100 |
0.468 |