Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLH0I_RS28500 Genome accession   NZ_CP176770
Coordinates   6498754..6500247 (+) Length   497 a.a.
NCBI ID   WP_411385937.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB03     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6493754..6505247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0I_RS28480 (ACLH0I_28480) glnK 6494541..6494879 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACLH0I_RS28485 (ACLH0I_28485) - 6495295..6495555 (+) 261 WP_053126510.1 accessory factor UbiK family protein -
  ACLH0I_RS28490 (ACLH0I_28490) - 6495574..6496851 (-) 1278 WP_411385935.1 sensor histidine kinase -
  ACLH0I_RS28495 (ACLH0I_28495) - 6497095..6498321 (-) 1227 WP_411385936.1 hypothetical protein -
  ACLH0I_RS28500 (ACLH0I_28500) comM 6498754..6500247 (+) 1494 WP_411385937.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLH0I_RS28505 (ACLH0I_28505) - 6500254..6501468 (-) 1215 WP_411385938.1 aldose 1-epimerase family protein -
  ACLH0I_RS28510 (ACLH0I_28510) - 6501845..6502705 (-) 861 WP_408003329.1 methyl-accepting chemotaxis protein -
  ACLH0I_RS28515 (ACLH0I_28515) - 6502748..6503923 (-) 1176 Protein_5615 Cache 3/Cache 2 fusion domain-containing protein -
  ACLH0I_RS28520 (ACLH0I_28520) - 6504008..6504928 (-) 921 WP_411385939.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53027.05 Da        Isoelectric Point: 7.8878

>NTDB_id=1082849 ACLH0I_RS28500 WP_411385937.1 6498754..6500247(+) (comM) [Pseudomonas sp. MPB03]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRMLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLNEVQGQAAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCACTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKHEP
GDDTATVAERVAEARERQHDRQGCANAFLDLPGLRRHCKLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQAGS
IRREHLAEALQYRPATA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1082849 ACLH0I_RS28500 WP_411385937.1 6498754..6500247(+) (comM) [Pseudomonas sp. MPB03]
ATGTCGCTTGCCATTGTCCACAGCCGCGCCCAAGTAGGGGTCGAGGCGCCTGCCGTTACCGTTGAAGTCCACCTGGCCAA
TGGCTTGCCGTCGCTGACGATGGTTGGCCTGCCGGAAGCGGCGGTCAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAACTCGGGGCTGAATTTTCCGGCGCGTCGCATCACCCTGAACCTGGCGCCGGCGGACCTGCCAAAAGACGGCGGCCGC
TTCGACCTGGCCATCGCCCTGGGGATCCTCTCGGCCAGCGTGCAGGTACCGACCCTGACCTTGGACGACGTGGAATGCCT
CGGGGAACTGGCCTTGTCTGGCGCAGTGCGCCCAGTGCGAGGGGTATTGCCCGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCATGCTGGTGGTGCCCCGGGCCAATGCCGAGGAAGCCTGCCTGGCCTCGGGGCTGAAGGTGATCGCCGTGGACCATCTG
CTGGAAGCGGTGGCGCACTTCAACGGTCACACGCCGGTCGAGCCGTTCGTTTCCAATGGGCTGCTTTCGGCCAGCAAACC
CTACCCCGACCTGAATGAAGTGCAAGGCCAGGCCGCGGCCAAGCGGGCGTTGCTGATTGCCGCCGCAGGGGCTCACAACC
TGTTGTTCAGCGGGCCACCGGGCACCGGCAAGACCCTGTTGGCGAGCCGTTTGCCCGGGCTGCTGCCGCCACTGGCCGAG
AGCGAAGCCCTGGAGGTCGCAGCCATTCAGTCGGTGGCCAGTTGCGTGCCGTTGAGCCATTGGCCGCAACGTCCGTTTCG
CCAGCCACACCACTCGGCTTCCGGTCCGGCGCTGGTCGGTGGCGGGTCAAAACCGCAGCCAGGGGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTCGACCGCAAGGTGTTGGAGGTCTTGAGAGAACCGCTGGAGTCC
GGACACATCGTGGTGTCTCGCGCCCGTGACCGGGTGCGCTTCCCGGCGCGCTTCCAGTTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGCTATCTTGGCGAGCCCAGCGGCCGCTGCGCCTGTACACCGGACATGGTGCAGCGCTACCGCAACAAACTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTCGCCCGGGAAGCCACGGCCTTGAACCCCAAGCACGAACCC
GGGGACGATACGGCCACGGTCGCCGAGCGCGTCGCCGAAGCCCGGGAGCGCCAGCACGACCGCCAGGGCTGTGCCAATGC
CTTCCTCGATCTGCCGGGATTGCGCCGGCATTGCAAGTTATCCACAACCGACGAAACCTGGCTGGAAACCGCCTGCGAGC
GGCTGACGCTGTCGCTGCGCGCCGCCCACCGCCTGCTCAAGGTCGCCCGGACACTGGCAGACCTGGAGCAAGCGGGGAGC
ATTCGCCGCGAGCACCTGGCCGAAGCGTTGCAGTACCGGCCGGCTACGGCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.833

100

0.465

Multiple sequence alignment