Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLH0I_RS03155 Genome accession   NZ_CP176770
Coordinates   737827..738891 (+) Length   354 a.a.
NCBI ID   WP_186706085.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 732827..743891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0I_RS03145 (ACLH0I_03145) - 733335..734603 (+) 1269 WP_053117649.1 malic enzyme-like NAD(P)-binding protein -
  ACLH0I_RS03150 (ACLH0I_03150) - 735175..737619 (-) 2445 WP_411387453.1 penicillin-binding protein 1A -
  ACLH0I_RS03155 (ACLH0I_03155) comM 737827..738891 (+) 1065 WP_186706085.1 type IV pilus assembly protein PilM Machinery gene
  ACLH0I_RS03160 (ACLH0I_03160) - 738891..739457 (+) 567 WP_186706084.1 PilN domain-containing protein -
  ACLH0I_RS03165 (ACLH0I_03165) pilO 739454..740077 (+) 624 WP_053117658.1 type 4a pilus biogenesis protein PilO -
  ACLH0I_RS03170 (ACLH0I_03170) - 740083..740604 (+) 522 WP_186706137.1 pilus assembly protein PilP -
  ACLH0I_RS03175 (ACLH0I_03175) pilQ 740618..742705 (+) 2088 WP_411386270.1 type IV pilus secretin PilQ Machinery gene
  ACLH0I_RS03180 (ACLH0I_03180) aroK 742710..743228 (+) 519 WP_060739556.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38153.79 Da        Isoelectric Point: 4.9155

>NTDB_id=1082824 ACLH0I_RS03155 WP_186706085.1 737827..738891(+) (comM) [Pseudomonas sp. MPB03]
MLRLFNKKAHALLGIDISSTSVKLLELSRQGERYRVESYAVEPLPANAVIEKNIAELEGVGQALSRLLAKARTPLRSVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVMGVSPRSAERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERAFGLLATQLAASQERLTVAVIDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTP
EQAGLAKKQGGLPDDYLGEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVAGLDRLIEQRLGTPTQVANP
FTNMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1082824 ACLH0I_RS03155 WP_186706085.1 737827..738891(+) (comM) [Pseudomonas sp. MPB03]
GTGCTACGACTCTTCAATAAAAAAGCCCATGCGCTTCTGGGGATCGACATCAGTTCGACGTCGGTGAAGCTGCTCGAGTT
GAGTCGCCAGGGCGAGCGATACCGCGTCGAGTCCTACGCGGTCGAACCGTTGCCGGCCAACGCCGTGATCGAGAAGAACA
TCGCCGAACTCGAAGGGGTGGGGCAGGCGTTGTCGCGGCTGCTGGCCAAGGCCAGGACACCCCTGCGCAGCGTGGCGGTG
GCCGTGGCGGGCTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGCCTGTCCGACGACGAGATGGAGAACCAGCT
CAAGATCGAGGCCGATCAATACATCCCTTATCCGCTGGATGAGGTGGCCATCGATTTCGAAGTGATGGGCGTTTCGCCCC
GCAGCGCCGAACGCGTCGAAGTACTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAGGTCCGCGAGGCGGCGTTGGCGCTC
GCCGGGCTGACGGCCCGGGTGGTGGATGTGGAGGCATATGCGCTGGAACGGGCGTTTGGCCTGCTCGCCACGCAACTGGC
CGCGTCCCAGGAGCGGCTGACAGTGGCGGTCATCGACATCGGCGCCACCATGACCACCCTCAGCGTGCTGCACAACGGGC
GCATCATCTATACCCGCGAACAACTGTTCGGCGGCCGCCAGTTGACCGAGGAAATTCAGCGCCGCTACGGCCTGACACCC
GAGCAGGCGGGCCTGGCGAAGAAGCAGGGTGGGCTGCCGGACGATTATCTCGGCGAAGTGTTGCAACCTTTTCGCGAGGC
CCTGGTGCAGCAGGTTTCGCGCTCCCTGCAATTTTTCTTCGCCTCGGGCCAGTACAGCGCGGTGGATCACATTCTGTTGG
CCGGGGGCACGGCTTCCGTCGCTGGCCTGGACCGGCTGATCGAGCAACGCCTGGGCACGCCGACGCAGGTGGCCAACCCG
TTCACCAACATGGCCCTGAGCAGCAAGGTCAATGCCGGTGCCCTGGCCAGTGATGCGCCGGCGCTGATGATCGCTTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

54.802

100

0.548
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475

Multiple sequence alignment