Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH55_RS00420 Genome accession   NZ_AP029028
Coordinates   93685..95208 (-) Length   507 a.a.
NCBI ID   WP_338717456.1    Uniprot ID   -
Organism   Herbaspirillum sp. DW155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 88685..100208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH55_RS00400 (HBDW_00810) - 89131..89658 (-) 528 WP_338717452.1 hypothetical protein -
  AACH55_RS00405 (HBDW_00820) - 89651..91009 (-) 1359 WP_338717453.1 phosphatase PAP2/dual specificity phosphatase family protein -
  AACH55_RS00410 (HBDW_00830) - 91006..92757 (-) 1752 WP_338717454.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  AACH55_RS00415 (HBDW_00840) - 92754..93368 (-) 615 WP_338717455.1 CDP-alcohol phosphatidyltransferase family protein -
  AACH55_RS00420 (HBDW_00850) comM 93685..95208 (-) 1524 WP_338717456.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH55_RS00425 (HBDW_00860) - 95282..95527 (-) 246 WP_338717457.1 accessory factor UbiK family protein -
  AACH55_RS00430 (HBDW_00870) - 95952..96731 (+) 780 WP_338717458.1 TorF family putative porin -
  AACH55_RS00435 (HBDW_00880) - 96744..97082 (+) 339 WP_006713297.1 P-II family nitrogen regulator -
  AACH55_RS00440 (HBDW_00890) amt 97098..98633 (+) 1536 WP_338717463.1 ammonium transporter -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54718.76 Da        Isoelectric Point: 9.6725

>NTDB_id=108183 AACH55_RS00420 WP_338717456.1 93685..95208(-) (comM) [Herbaspirillum sp. DW155]
MSLAVLRSRALAGMSAPPVTVEVHLANGLPAFTIVGLPEAEVKEARDRVRAALQNARFEFPARRITVNLAPADLPKESGR
FDLAIALGILAASEQIPGDRLDDHEYAGELSLSGQLLPIRGALAMTCAMQRQHQQDGHPRSFILPAANADEAALLPQAHI
LPATSLLEVCNHFSTRDPAARLQRHQARRATGTPAYPDFSDIKGQLQARRAMEVAAAGNHSILLVGPPGAGKSMLATRFP
GILPPMTQEQALESAAVQSLTGRFDINRWQQRPYRAPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDEIAEYPRSVLD
VLRQPMESGHIVISRAARQAQFPARFQLVAAMNPCPCGLFGDAAGRCRCTPEVVKRYQARLSGPLLDRIDMQLQVAALSP
AELAAQQPGEASAVMAQRVAHAFERQLQRQGKPNSQLSGSEIDRICRHDAAAAQLLQAAILRLNWSARAYHRVLKLARTI
ADLAGSSVITHAHVAEAVQYRRMLTGN

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=108183 AACH55_RS00420 WP_338717456.1 93685..95208(-) (comM) [Herbaspirillum sp. DW155]
ATGAGCCTGGCGGTCTTGCGCAGCCGCGCCCTGGCGGGCATGAGCGCCCCGCCGGTGACGGTCGAGGTGCATCTGGCCAA
TGGCTTGCCGGCTTTCACCATCGTCGGGCTCCCCGAAGCCGAGGTGAAGGAAGCCCGTGATCGCGTCCGGGCGGCACTGC
AGAATGCCCGGTTTGAATTCCCTGCCCGCCGCATTACCGTCAACTTGGCCCCGGCCGACCTGCCCAAGGAATCCGGGCGC
TTTGACCTGGCCATCGCCTTGGGCATCCTGGCGGCTTCCGAGCAGATCCCGGGCGACCGCCTGGACGATCATGAATATGC
CGGCGAACTGTCGCTGTCGGGCCAACTGCTGCCGATTCGCGGCGCGCTGGCGATGACCTGCGCGATGCAGCGCCAGCATC
AACAGGATGGCCACCCGCGCAGCTTCATCCTGCCGGCCGCCAATGCCGACGAAGCGGCGCTGCTGCCGCAGGCCCACATC
CTGCCGGCGACCTCGCTGCTGGAGGTCTGCAATCACTTCAGCACGCGCGATCCGGCAGCGCGGCTGCAACGACACCAGGC
GCGGAGGGCCACCGGCACGCCGGCGTATCCGGATTTCAGCGACATCAAGGGACAATTGCAGGCGCGGCGTGCCATGGAGG
TGGCGGCGGCCGGCAATCACAGCATCTTGCTGGTCGGCCCGCCCGGAGCAGGCAAGTCCATGCTGGCCACGCGCTTTCCC
GGCATCCTGCCGCCGATGACGCAGGAGCAGGCGCTGGAATCGGCTGCCGTGCAGTCGCTGACCGGCCGTTTCGACATCAA
CCGCTGGCAGCAGCGCCCGTACCGCGCCCCGCATCACACGGCATCCGCAGTGGCGCTGGTCGGCGGCGGCAGCCCGCCGC
GGCCGGGCGAGATTTCGCTGGCCCATCATGGCGTCCTGTTCCTGGACGAGATCGCAGAGTATCCCCGCAGCGTGCTCGAC
GTGCTGCGCCAGCCGATGGAGTCGGGACACATCGTCATCTCGCGGGCGGCCAGGCAGGCGCAGTTTCCGGCCCGCTTCCA
GCTGGTCGCGGCGATGAATCCTTGCCCGTGCGGGCTCTTTGGAGATGCGGCGGGGCGCTGCCGCTGCACGCCGGAGGTCG
TCAAACGCTACCAGGCCCGCCTGTCGGGGCCGCTGCTGGACCGCATCGACATGCAATTGCAGGTGGCGGCCCTGAGTCCG
GCCGAACTGGCGGCCCAGCAGCCGGGGGAAGCCAGCGCCGTCATGGCACAGCGCGTCGCGCATGCCTTTGAACGGCAATT
GCAGCGCCAGGGCAAACCCAACAGCCAGCTCAGCGGCAGCGAAATCGACCGGATCTGCCGGCACGACGCAGCCGCCGCCC
AACTGCTTCAAGCCGCCATATTGCGGCTGAACTGGTCGGCGCGGGCCTATCACCGGGTACTGAAGCTGGCGCGCACGATT
GCCGACCTGGCCGGGTCCAGCGTGATCACGCACGCGCACGTGGCCGAGGCAGTGCAATACCGGCGGATGCTGACCGGGAA
TTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.976

99.803

0.519
  comM Vibrio campbellii strain DS40M4

51.186

99.803

0.511
  comM Legionella pneumophila strain ERS1305867

50

100

0.501
  comM Legionella pneumophila str. Paris

50

100

0.501
  comM Haemophilus influenzae Rd KW20

49.705

100

0.499
  comM Glaesserella parasuis strain SC1401

49.901

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.725

100

0.44

Multiple sequence alignment