Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | AACH42_RS12455 | Genome accession | NZ_AP029022 |
| Coordinates | 2803795..2804904 (-) | Length | 369 a.a. |
| NCBI ID | WP_338612829.1 | Uniprot ID | - |
| Organism | Chryseobacterium gambrini strain DW100 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 2798795..2809904
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AACH42_RS12425 (CRDW_24410) | - | 2799106..2799249 (+) | 144 | WP_214587685.1 | hypothetical protein | - |
| AACH42_RS12430 (CRDW_24420) | - | 2799388..2800359 (+) | 972 | WP_076393992.1 | ion channel | - |
| AACH42_RS12435 (CRDW_24430) | - | 2800360..2800848 (+) | 489 | WP_108410204.1 | YkgJ family cysteine cluster protein | - |
| AACH42_RS12440 (CRDW_24440) | - | 2800965..2801309 (+) | 345 | WP_338612827.1 | hypothetical protein | - |
| AACH42_RS12445 (CRDW_24450) | - | 2801524..2801889 (-) | 366 | WP_338612828.1 | DUF1801 domain-containing protein | - |
| AACH42_RS12450 (CRDW_24460) | gdhA | 2802246..2803604 (-) | 1359 | WP_076394000.1 | NADP-specific glutamate dehydrogenase | - |
| AACH42_RS12455 (CRDW_24470) | dprA | 2803795..2804904 (-) | 1110 | WP_338612829.1 | DNA-processing protein DprA | Machinery gene |
| AACH42_RS12460 (CRDW_24480) | - | 2804940..2805710 (-) | 771 | WP_076394004.1 | rhomboid family intramembrane serine protease | - |
| AACH42_RS12465 (CRDW_24490) | - | 2805784..2805924 (-) | 141 | WP_214587693.1 | hypothetical protein | - |
| AACH42_RS12470 (CRDW_24500) | - | 2805980..2806909 (+) | 930 | WP_256039606.1 | DUF3078 domain-containing protein | - |
| AACH42_RS12475 (CRDW_24510) | - | 2807155..2807664 (+) | 510 | WP_338612830.1 | hypothetical protein | - |
| AACH42_RS12480 (CRDW_24520) | - | 2807661..2808008 (+) | 348 | WP_338612831.1 | tRNA-binding protein | - |
| AACH42_RS12485 (CRDW_24530) | - | 2808085..2808789 (+) | 705 | WP_108408544.1 | 3'-5' exonuclease | - |
| AACH42_RS12490 (CRDW_24540) | - | 2808793..2809119 (+) | 327 | WP_076394014.1 | SUF system Fe-S cluster assembly protein | - |
| AACH42_RS12495 (CRDW_24550) | - | 2809280..2809669 (+) | 390 | WP_338612832.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 41316.93 Da Isoelectric Point: 6.9681
>NTDB_id=108145 AACH42_RS12455 WP_338612829.1 2803795..2804904(-) (dprA) [Chryseobacterium gambrini strain DW100]
MYSEEHLYSIALRECNLIGDINFYKLVRTFGSAKNAWENTKKEYKKLDGFGSKMISDIGNPDHLKFAENELKFCETNHIK
INLRHLHDLPKLLNECDDAPVILYQKGNYDGSKQKVSMVGTRNMTSYGKQFIEEFFQETSSGNFISVSGLALGVDKEVHE
QSILHQISTVAVLAHGFHTLYPSKNKKLSEKILEEGGVLFTEFNSSRKPDRENFIQRNRIVAGISPATIVVETAFGGGSI
STATYANLYNREVYALPGKITDKQSQGCNHLIFQNKASAISTIKDLVENLGFNHPKGRTGELFSHSEISIQLTENQSEIF
RIIDENPQISLDDLADKTALASHKILPVILELELLGKVKSLSGRQFLAT
MYSEEHLYSIALRECNLIGDINFYKLVRTFGSAKNAWENTKKEYKKLDGFGSKMISDIGNPDHLKFAENELKFCETNHIK
INLRHLHDLPKLLNECDDAPVILYQKGNYDGSKQKVSMVGTRNMTSYGKQFIEEFFQETSSGNFISVSGLALGVDKEVHE
QSILHQISTVAVLAHGFHTLYPSKNKKLSEKILEEGGVLFTEFNSSRKPDRENFIQRNRIVAGISPATIVVETAFGGGSI
STATYANLYNREVYALPGKITDKQSQGCNHLIFQNKASAISTIKDLVENLGFNHPKGRTGELFSHSEISIQLTENQSEIF
RIIDENPQISLDDLADKTALASHKILPVILELELLGKVKSLSGRQFLAT
Nucleotide
Download Length: 1110 bp
>NTDB_id=108145 AACH42_RS12455 WP_338612829.1 2803795..2804904(-) (dprA) [Chryseobacterium gambrini strain DW100]
ATGTATTCTGAAGAACATCTTTATTCTATCGCTCTGCGCGAGTGTAATTTAATCGGGGATATCAATTTTTATAAGCTTGT
CCGTACTTTCGGAAGTGCCAAGAACGCTTGGGAAAACACCAAAAAGGAATACAAAAAGCTGGACGGATTCGGATCTAAAA
TGATTTCAGACATCGGAAATCCTGATCATCTGAAGTTTGCCGAAAATGAACTGAAGTTTTGTGAGACCAACCATATCAAA
ATTAATCTCAGACATCTTCATGATCTTCCCAAACTCTTAAACGAATGCGATGATGCTCCTGTAATTCTCTATCAGAAAGG
GAATTATGACGGTTCTAAGCAAAAGGTAAGTATGGTAGGAACAAGAAATATGACTTCCTACGGAAAGCAGTTTATTGAAG
AGTTTTTTCAGGAAACGTCTTCCGGTAATTTTATTTCGGTGAGCGGTCTGGCTTTAGGCGTCGATAAAGAAGTTCATGAG
CAGTCTATTCTTCATCAGATTTCTACGGTTGCCGTTTTAGCACACGGTTTTCATACATTGTATCCTTCAAAAAACAAAAA
ATTATCAGAAAAAATTCTTGAGGAAGGAGGGGTGTTATTTACAGAATTCAATTCTTCAAGAAAGCCGGACCGCGAAAATT
TTATTCAGAGAAACAGAATCGTAGCCGGAATTTCTCCTGCGACAATTGTGGTGGAAACGGCTTTTGGCGGAGGTTCAATC
AGCACGGCAACCTATGCAAATCTGTATAACCGTGAAGTGTATGCGCTTCCGGGAAAAATTACGGACAAGCAGAGTCAGGG
CTGTAATCATCTGATTTTTCAGAACAAAGCTTCGGCAATTTCCACGATAAAAGATCTGGTTGAAAACTTAGGATTTAATC
ATCCGAAGGGAAGAACTGGAGAATTATTTTCTCACAGTGAAATTTCAATTCAATTAACTGAGAATCAAAGTGAAATATTC
AGAATAATAGATGAGAATCCGCAGATTTCTCTGGATGATCTTGCCGATAAAACAGCACTTGCCTCACACAAAATTTTACC
GGTAATTTTAGAATTGGAACTTTTGGGGAAGGTAAAATCACTTTCGGGGAGACAATTTTTAGCAACCTGA
ATGTATTCTGAAGAACATCTTTATTCTATCGCTCTGCGCGAGTGTAATTTAATCGGGGATATCAATTTTTATAAGCTTGT
CCGTACTTTCGGAAGTGCCAAGAACGCTTGGGAAAACACCAAAAAGGAATACAAAAAGCTGGACGGATTCGGATCTAAAA
TGATTTCAGACATCGGAAATCCTGATCATCTGAAGTTTGCCGAAAATGAACTGAAGTTTTGTGAGACCAACCATATCAAA
ATTAATCTCAGACATCTTCATGATCTTCCCAAACTCTTAAACGAATGCGATGATGCTCCTGTAATTCTCTATCAGAAAGG
GAATTATGACGGTTCTAAGCAAAAGGTAAGTATGGTAGGAACAAGAAATATGACTTCCTACGGAAAGCAGTTTATTGAAG
AGTTTTTTCAGGAAACGTCTTCCGGTAATTTTATTTCGGTGAGCGGTCTGGCTTTAGGCGTCGATAAAGAAGTTCATGAG
CAGTCTATTCTTCATCAGATTTCTACGGTTGCCGTTTTAGCACACGGTTTTCATACATTGTATCCTTCAAAAAACAAAAA
ATTATCAGAAAAAATTCTTGAGGAAGGAGGGGTGTTATTTACAGAATTCAATTCTTCAAGAAAGCCGGACCGCGAAAATT
TTATTCAGAGAAACAGAATCGTAGCCGGAATTTCTCCTGCGACAATTGTGGTGGAAACGGCTTTTGGCGGAGGTTCAATC
AGCACGGCAACCTATGCAAATCTGTATAACCGTGAAGTGTATGCGCTTCCGGGAAAAATTACGGACAAGCAGAGTCAGGG
CTGTAATCATCTGATTTTTCAGAACAAAGCTTCGGCAATTTCCACGATAAAAGATCTGGTTGAAAACTTAGGATTTAATC
ATCCGAAGGGAAGAACTGGAGAATTATTTTCTCACAGTGAAATTTCAATTCAATTAACTGAGAATCAAAGTGAAATATTC
AGAATAATAGATGAGAATCCGCAGATTTCTCTGGATGATCTTGCCGATAAAACAGCACTTGCCTCACACAAAATTTTACC
GGTAATTTTAGAATTGGAACTTTTGGGGAAGGTAAAATCACTTTCGGGGAGACAATTTTTAGCAACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
54.396 |
98.645 |
0.537 |