Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACAK39_RS21040 Genome accession   NZ_AP029016
Coordinates   4395344..4396864 (+) Length   506 a.a.
NCBI ID   WP_369604670.1    Uniprot ID   -
Organism   Enterobacter asburiae strain CRE21025     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4390344..4401864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK39_RS21015 (EAG21025_41270) ilvE 4391910..4392839 (-) 930 WP_023326297.1 branched-chain-amino-acid transaminase -
  ACAK39_RS21020 (EAG21025_41280) ilvM 4392858..4393121 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  ACAK39_RS21025 (EAG21025_41290) ilvG 4393118..4394764 (-) 1647 WP_121423338.1 acetolactate synthase 2 catalytic subunit -
  ACAK39_RS21030 ilvX 4394767..4394817 (-) 51 WP_166792073.1 peptide IlvX -
  ACAK39_RS21035 ilvL 4394904..4395002 (-) 99 WP_001311244.1 ilv operon leader peptide -
  ACAK39_RS21040 (EAG21025_41300) comM 4395344..4396864 (+) 1521 WP_369604670.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACAK39_RS21045 (EAG21025_41310) - 4396894..4397232 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  ACAK39_RS21050 (EAG21025_41320) hdfR 4397351..4398172 (+) 822 WP_047646979.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55013.92 Da        Isoelectric Point: 6.9665

>NTDB_id=108094 ACAK39_RS21040 WP_369604670.1 4395344..4396864(+) (comM) [Enterobacter asburiae strain CRE21025]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLDSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSGPEEYDDAIADAPEELSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=108094 ACAK39_RS21040 WP_369604670.1 4395344..4396864(+) (comM) [Enterobacter asburiae strain CRE21025]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGACTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCAGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGTCATGAACTGTCCGGGCCGGAGGAGTACGATGATGCTATAGCGGATGCTCC
AGAGGAGCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCGGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACCATGCTGGCAAGCAGGTTAAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGAGGGTCTATCCCCGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGGGAACCTATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCGGTTTCAGCTGGTCGCGGCGATGAACCCCAG
CCCGACGGGTCATTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGATGTACGCGAGCGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCAGACAGTTCTGTTCTCTTAACGTCGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTACTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment