Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFGDV_RS03055 Genome accession   NZ_CP176528
Coordinates   641884..643407 (-) Length   507 a.a.
NCBI ID   WP_136413679.1    Uniprot ID   -
Organism   Noviherbaspirillum sp. ST 5-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 636884..648407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFGDV_RS03030 - 637283..637804 (-) 522 WP_136413689.1 hypothetical protein -
  ACFGDV_RS03035 - 637856..638845 (-) 990 WP_136413687.1 DMT family transporter -
  ACFGDV_RS03040 - 638903..639751 (-) 849 WP_136413685.1 AraC family transcriptional regulator -
  ACFGDV_RS03045 - 639786..640124 (-) 339 WP_136413683.1 hypothetical protein -
  ACFGDV_RS03050 - 640300..641748 (+) 1449 WP_136413681.1 PLP-dependent aminotransferase family protein -
  ACFGDV_RS03055 comM 641884..643407 (-) 1524 WP_136413679.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFGDV_RS03060 - 643404..643655 (-) 252 WP_136413677.1 accessory factor UbiK family protein -
  ACFGDV_RS03065 - 643915..644640 (+) 726 WP_136413675.1 TorF family putative porin -
  ACFGDV_RS03070 glnK 644652..644990 (+) 339 WP_136413673.1 P-II family nitrogen regulator -
  ACFGDV_RS03075 - 645003..646538 (+) 1536 WP_136413671.1 ammonium transporter -
  ACFGDV_RS03080 gshA 646800..648098 (+) 1299 WP_136413669.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55078.82 Da        Isoelectric Point: 7.8444

>NTDB_id=1080709 ACFGDV_RS03055 WP_136413679.1 641884..643407(-) (comM) [Noviherbaspirillum sp. ST 5-3]
MSLAVLKSRALSGMQAPEVTVEVHLANGLPSFTIVGLPETEVKESKDRVRAALQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQMPADELDKYEFAGELSLSGELRPIRGALAMTYAMHRAGDVSGKERAFILPRANADEAALVRDASI
FPAESLLQVCAHFAASDGEARLARHRAHADAARPAYPDFAEVKGQAQAKRALEVAAAGGHSVLMVGPPGTGKSMLAARFP
GILPPMTDEEALESAAVQSLSSGFSISRWKARPFRAPHHTASGVALVGGGGTPRPGEISLAHRGVLFLDELPEFDRKVLE
VLREPLESGHITISRAARQSDFPARFQLVAAMNPCPCGYLGHHANRCRCTPDVVARYQDKISGPLLDRIDMQIQVGALPH
DELLRQADGEPSRVIAERVEQAFERQLKRQGKGNHGLSTAEIDAHCKPDESGEQLLRHAMSRLNWSARAYHRVLKVARTI
ADIADENIIRQPHVAEAIQYRRALREH

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1080709 ACFGDV_RS03055 WP_136413679.1 641884..643407(-) (comM) [Noviherbaspirillum sp. ST 5-3]
ATGAGCCTGGCGGTTCTGAAAAGCCGCGCACTTTCCGGAATGCAAGCTCCGGAAGTCACGGTCGAAGTCCATTTGGCAAA
CGGCTTGCCCTCCTTCACCATCGTTGGCCTCCCGGAAACTGAAGTCAAGGAATCGAAGGACCGGGTGCGCGCGGCATTGC
AGAATGCGCGCTTCGAGTTCCCCGCGCGTCGCATTACCGTCAATCTTGCCCCTGCCGACCTGCCGAAGGAGTCCGGCCGC
TTCGACCTGCCGATCGCGCTTGGCATCCTCGCCGCTTCCGGCCAGATGCCTGCCGACGAACTGGACAAGTACGAATTCGC
GGGCGAGTTGTCCTTGTCAGGCGAATTGCGCCCGATTCGGGGTGCGCTGGCGATGACCTATGCGATGCACCGCGCCGGCG
ATGTCAGCGGCAAGGAACGCGCTTTCATCCTGCCGCGCGCCAATGCCGACGAAGCAGCGCTGGTGCGCGATGCGTCGATT
TTCCCGGCCGAATCCCTGTTGCAGGTCTGCGCCCATTTTGCCGCCAGCGACGGAGAAGCCCGGCTCGCACGACATCGTGC
CCACGCGGACGCAGCACGCCCGGCCTATCCCGATTTCGCCGAAGTAAAAGGTCAGGCGCAGGCCAAGCGCGCACTGGAAG
TCGCCGCTGCCGGCGGCCATAGCGTGCTGATGGTCGGCCCGCCTGGAACCGGCAAGTCGATGTTGGCGGCACGCTTTCCC
GGCATCCTGCCGCCGATGACGGATGAAGAAGCACTCGAATCAGCGGCGGTGCAATCGCTTTCGAGCGGCTTTTCGATATC
TCGCTGGAAGGCACGCCCTTTCCGCGCTCCGCACCACACGGCTTCCGGCGTGGCGCTGGTTGGCGGCGGCGGCACGCCAC
GTCCCGGCGAAATTTCGCTGGCGCATCGGGGCGTCCTCTTCCTCGATGAATTACCCGAATTTGATCGCAAGGTGCTCGAG
GTGCTGCGCGAACCCTTGGAGTCGGGCCACATCACGATTTCACGCGCAGCGCGGCAATCCGATTTCCCGGCGCGCTTTCA
ACTGGTCGCGGCCATGAACCCCTGCCCCTGCGGCTACCTCGGCCACCATGCCAATCGCTGCCGCTGCACGCCGGATGTGG
TGGCGCGTTACCAGGACAAGATTTCCGGCCCGCTGCTTGACCGTATCGACATGCAGATCCAGGTTGGCGCGCTGCCGCAT
GACGAATTGCTCAGGCAGGCCGACGGCGAGCCGTCGCGCGTGATTGCCGAGCGCGTCGAGCAGGCGTTCGAAAGACAGCT
CAAGCGCCAGGGCAAGGGCAATCACGGTTTGTCCACGGCCGAGATCGACGCGCATTGCAAGCCGGATGAATCAGGCGAAC
AACTCTTGCGTCATGCCATGTCGAGGCTGAACTGGTCCGCGCGTGCCTATCACCGCGTGCTGAAAGTCGCTCGCACCATT
GCCGATATTGCCGATGAAAACATCATTCGCCAGCCGCATGTGGCGGAAGCGATTCAATATCGCCGCGCGCTGCGCGAGCA
TTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-401)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.762

99.408

0.544
  comM Vibrio cholerae strain A1552

53.968

99.408

0.536
  comM Haemophilus influenzae Rd KW20

52.642

100

0.531
  comM Glaesserella parasuis strain SC1401

52.465

100

0.525
  comM Legionella pneumophila str. Paris

50.787

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.787

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.68

100

0.471

Multiple sequence alignment