Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | ACJ3Y0_RS10030 | Genome accession | NZ_CP176471 |
| Coordinates | 2220493..2221122 (+) | Length | 209 a.a. |
| NCBI ID | WP_146492434.1 | Uniprot ID | - |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2215493..2226122
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ3Y0_RS10015 (ACJ3Y0_10015) | - | 2216164..2218725 (-) | 2562 | WP_372383792.1 | penicillin-binding protein 1A | - |
| ACJ3Y0_RS10020 (ACJ3Y0_10020) | pilM | 2218877..2219902 (+) | 1026 | WP_285953307.1 | type IV pilus assembly protein PilM | Machinery gene |
| ACJ3Y0_RS10025 (ACJ3Y0_10025) | pilN | 2219886..2220500 (+) | 615 | WP_372383793.1 | PilN domain-containing protein | Machinery gene |
| ACJ3Y0_RS10030 (ACJ3Y0_10030) | pilO | 2220493..2221122 (+) | 630 | WP_146492434.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACJ3Y0_RS10035 (ACJ3Y0_10035) | pilP | 2221109..2221627 (+) | 519 | WP_210446842.1 | pilus assembly protein PilP | Machinery gene |
| ACJ3Y0_RS10040 (ACJ3Y0_10040) | pilQ | 2221663..2223381 (+) | 1719 | WP_372383794.1 | type IV pilus secretin PilQ | Machinery gene |
| ACJ3Y0_RS10045 (ACJ3Y0_10045) | aroK | 2223558..2224076 (+) | 519 | WP_017061125.1 | shikimate kinase AroK | - |
| ACJ3Y0_RS10050 (ACJ3Y0_10050) | aroB | 2224102..2225190 (+) | 1089 | WP_017061124.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24334.84 Da Isoelectric Point: 4.6805
>NTDB_id=1080247 ACJ3Y0_RS10030 WP_146492434.1 2220493..2221122(+) (pilO) [Vibrio sp. BS-M-Sm-2]
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILVLIVLIQGVGTWLYVLPLDDELQQMKQQEHTLKTTLRIKANKV
AALPKLQSQLEELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILVLIVLIQGVGTWLYVLPLDDELQQMKQQEHTLKTTLRIKANKV
AALPKLQSQLEELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 630 bp
>NTDB_id=1080247 ACJ3Y0_RS10030 WP_146492434.1 2220493..2221122(+) (pilO) [Vibrio sp. BS-M-Sm-2]
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTCGATGTTGATGAGATCACCGAATG
GCCATTGTTGCCTCAGCTTCTCGTGATTCTGGTGTTGATAGTGTTAATCCAAGGTGTTGGCACTTGGCTTTATGTGCTGC
CGCTCGACGATGAACTGCAACAGATGAAGCAACAGGAGCACACCTTAAAAACGACCTTGCGAATAAAGGCGAATAAGGTT
GCAGCCTTACCTAAACTCCAGAGCCAATTAGAGGAGTTAACCAGCCGTTACGATTACTTGTTAGAGCAGCTGCCCGTTCA
AAAAGAACTGGCCAGTATGTTGGCGTCAGTGAATGAGCTCGGCTTGGATAACTCGCTGACCTTCACGCGAATTGATTGGG
GGCAAAAGCAGAACAAGGAGTTCCTCTATCGATTGCCTCTCAATATTGAGCTGACAGGTGACTATCACGAGATTGGTGAC
TTTTCTGCTGCCATCGCCAAGCTGCCGCGCATTATCAGCTTTGATGATGTGAATTGGCAGCGAGTCAGTCAAGAAAGCAG
CACGCTGCACTTTAGGGTTCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAACCCAATAG
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTCGATGTTGATGAGATCACCGAATG
GCCATTGTTGCCTCAGCTTCTCGTGATTCTGGTGTTGATAGTGTTAATCCAAGGTGTTGGCACTTGGCTTTATGTGCTGC
CGCTCGACGATGAACTGCAACAGATGAAGCAACAGGAGCACACCTTAAAAACGACCTTGCGAATAAAGGCGAATAAGGTT
GCAGCCTTACCTAAACTCCAGAGCCAATTAGAGGAGTTAACCAGCCGTTACGATTACTTGTTAGAGCAGCTGCCCGTTCA
AAAAGAACTGGCCAGTATGTTGGCGTCAGTGAATGAGCTCGGCTTGGATAACTCGCTGACCTTCACGCGAATTGATTGGG
GGCAAAAGCAGAACAAGGAGTTCCTCTATCGATTGCCTCTCAATATTGAGCTGACAGGTGACTATCACGAGATTGGTGAC
TTTTCTGCTGCCATCGCCAAGCTGCCGCGCATTATCAGCTTTGATGATGTGAATTGGCAGCGAGTCAGTCAAGAAAGCAG
CACGCTGCACTTTAGGGTTCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAACCCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
75.648 |
92.344 |
0.699 |
| pilO | Vibrio campbellii strain DS40M4 |
71.892 |
88.517 |
0.636 |