Detailed information NTG1080245

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: ACJ3Y0_RS10020
• Genome accession: NZ_CP176471
• Coordinates: 2218877..2219902 (+)
• Length: 341 a.a.
• NCBI ID: WP_285953307.1
• Uniprot ID: -
• Organism: Vibrio sp. BS-M-Sm-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2213877..2224902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJ3Y0_RS10000 (ACJ3Y0_10000)	-	2214208..2214936 (-)	729	WP_017061133.1	glutathione peroxidase	-
ACJ3Y0_RS10005 (ACJ3Y0_10005)	-	2214981..2215160 (-)	180	WP_017096544.1	hypothetical protein	-
ACJ3Y0_RS10010 (ACJ3Y0_10010)	oxyR	2215159..2216052 (+)	894	WP_372057601.1	DNA-binding transcriptional regulator OxyR	-
ACJ3Y0_RS10015 (ACJ3Y0_10015)	-	2216164..2218725 (-)	2562	WP_372383792.1	penicillin-binding protein 1A	-
ACJ3Y0_RS10020 (ACJ3Y0_10020)	pilM	2218877..2219902 (+)	1026	WP_285953307.1	type IV pilus assembly protein PilM	Machinery gene
ACJ3Y0_RS10025 (ACJ3Y0_10025)	pilN	2219886..2220500 (+)	615	WP_372383793.1	PilN domain-containing protein	Machinery gene
ACJ3Y0_RS10030 (ACJ3Y0_10030)	pilO	2220493..2221122 (+)	630	WP_146492434.1	type 4a pilus biogenesis protein PilO	Machinery gene
ACJ3Y0_RS10035 (ACJ3Y0_10035)	pilP	2221109..2221627 (+)	519	WP_210446842.1	pilus assembly protein PilP	Machinery gene
ACJ3Y0_RS10040 (ACJ3Y0_10040)	pilQ	2221663..2223381 (+)	1719	WP_372383794.1	type IV pilus secretin PilQ	Machinery gene
ACJ3Y0_RS10045 (ACJ3Y0_10045)	aroK	2223558..2224076 (+)	519	WP_017061125.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38210.66 Da
• Isoelectric Point: 6.7735

>NTDB_id=1080245 ACJ3Y0_RS10020 WP_285953307.1 2218877..2219902(+) (pilM) [Vibrio sp. BS-M-Sm-2]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGCRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVDSRAYALTKAGFKP
VVVDTQAHGLLNIWQLASRLYPEKKNWLLVDVGIDQTSLGVIPQNSVPFYKDIAFGTQDLRSSDNPSDTEGVLGTAEDTH
QFIVNLIEKLKRQLQLYSSGNAQQPISGIWLMGEGASIPMVTEELERHFQLSCESLNPLSLFENKVAKRRRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide

• Length: 1026 bp

>NTDB_id=1080245 ACJ3Y0_RS10020 WP_285953307.1 2218877..2219902(+) (pilM) [Vibrio sp. BS-M-Sm-2]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCCGTGGTACTAAAACCCGTGGGGGAGTT
GTATGCCCTAGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTTAAAGAACTTAGGAAAGGACTGCCTTTTGGCTGTCGCAACGTCGCCATTTCGGTACCTGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGTGAGTTAGAAGACAGAGAAAAAGAGTTTTCTATCTATCAAACCTTCGCCCA
TCAATCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGTTCGACAA
GCAGTTATCAGGTATACGCCACTCGTAAGGAAGTGGTGGATAGCCGAGCTTATGCATTAACTAAGGCTGGTTTTAAACCT
GTGGTGGTAGATACACAGGCACATGGGCTGCTCAATATCTGGCAACTAGCCTCGCGTCTGTATCCCGAAAAGAAAAACTG
GCTGCTGGTGGATGTTGGCATCGACCAAACGTCGCTAGGAGTTATCCCGCAGAATTCAGTGCCTTTCTATAAAGACATCG
CTTTTGGTACTCAAGATCTTCGCAGTTCGGATAACCCAAGTGATACAGAAGGTGTGCTCGGCACGGCTGAAGATACCCAT
CAATTCATTGTTAATTTGATTGAGAAGCTCAAGCGTCAATTACAGCTTTATTCATCGGGAAATGCGCAGCAACCTATCTC
TGGGATCTGGCTGATGGGTGAGGGTGCCAGCATTCCTATGGTAACCGAAGAGCTAGAGCGCCATTTTCAGCTGAGCTGTG
AGTCATTGAATCCTTTGTCTCTGTTTGAGAACAAGGTCGCCAAGAGACGTCGACTGCCAATGGACTGGCAACACTTTGGC
ATTGCCGCGGGTATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-220)

• Type IV pilus assembly protein PilM; (PilM_2) (242-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	54.277	99.413	0.54
pilM	Vibrio campbellii strain DS40M4	48.538	100	0.487