Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACJ3Y0_RS06865 | Genome accession | NZ_CP176471 |
| Coordinates | 1545909..1546466 (-) | Length | 185 a.a. |
| NCBI ID | WP_017061342.1 | Uniprot ID | - |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1540909..1551466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ3Y0_RS06845 (ACJ3Y0_06845) | - | 1541312..1541647 (-) | 336 | WP_285955113.1 | MSHA biogenesis protein MshK | - |
| ACJ3Y0_RS06850 (ACJ3Y0_06850) | pilO | 1541640..1542287 (-) | 648 | WP_285955112.1 | type 4a pilus biogenesis protein PilO | - |
| ACJ3Y0_RS06855 (ACJ3Y0_06855) | - | 1542287..1543729 (-) | 1443 | WP_327784260.1 | MSHA biogenesis protein MshI | - |
| ACJ3Y0_RS06860 (ACJ3Y0_06860) | csrD | 1543732..1545747 (-) | 2016 | WP_327784261.1 | RNase E specificity factor CsrD | - |
| ACJ3Y0_RS06865 (ACJ3Y0_06865) | ssb | 1545909..1546466 (-) | 558 | WP_017061342.1 | single-stranded DNA-binding protein | Machinery gene |
| ACJ3Y0_RS06870 (ACJ3Y0_06870) | qstR | 1546745..1547392 (+) | 648 | WP_060982966.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ACJ3Y0_RS06875 (ACJ3Y0_06875) | galU | 1547550..1548422 (+) | 873 | WP_061019114.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ACJ3Y0_RS06880 (ACJ3Y0_06880) | uvrA | 1548573..1551404 (+) | 2832 | WP_102478994.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 185 a.a. Molecular weight: 20400.52 Da Isoelectric Point: 5.2358
>NTDB_id=1080236 ACJ3Y0_RS06865 WP_017061342.1 1545909..1546466(-) (ssb) [Vibrio sp. BS-M-Sm-2]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 558 bp
>NTDB_id=1080236 ACJ3Y0_RS06865 WP_017061342.1 1545909..1546466(-) (ssb) [Vibrio sp. BS-M-Sm-2]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGCGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTTGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGCAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAACAACAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTAA
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGCGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTTGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGCAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAACAACAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.72 |
100 |
0.822 |
| ssb | Glaesserella parasuis strain SC1401 |
57.447 |
100 |
0.584 |
| ssb | Neisseria meningitidis MC58 |
47.568 |
100 |
0.476 |
| ssb | Neisseria gonorrhoeae MS11 |
47.568 |
100 |
0.476 |