Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | ACJ3Y0_RS06870 | Genome accession | NZ_CP176471 |
| Coordinates | 1546745..1547392 (+) | Length | 215 a.a. |
| NCBI ID | WP_060982966.1 | Uniprot ID | - |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1541745..1552392
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ3Y0_RS06855 (ACJ3Y0_06855) | - | 1542287..1543729 (-) | 1443 | WP_327784260.1 | MSHA biogenesis protein MshI | - |
| ACJ3Y0_RS06860 (ACJ3Y0_06860) | csrD | 1543732..1545747 (-) | 2016 | WP_327784261.1 | RNase E specificity factor CsrD | - |
| ACJ3Y0_RS06865 (ACJ3Y0_06865) | ssb | 1545909..1546466 (-) | 558 | WP_017061342.1 | single-stranded DNA-binding protein | Machinery gene |
| ACJ3Y0_RS06870 (ACJ3Y0_06870) | qstR | 1546745..1547392 (+) | 648 | WP_060982966.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ACJ3Y0_RS06875 (ACJ3Y0_06875) | galU | 1547550..1548422 (+) | 873 | WP_061019114.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ACJ3Y0_RS06880 (ACJ3Y0_06880) | uvrA | 1548573..1551404 (+) | 2832 | WP_102478994.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 215 a.a. Molecular weight: 25185.32 Da Isoelectric Point: 9.2504
>NTDB_id=1080237 ACJ3Y0_RS06870 WP_060982966.1 1546745..1547392(+) (qstR) [Vibrio sp. BS-M-Sm-2]
MRKSRYARTLHFMCIDPSDTYLHVKEIEKHLSIILYKMTPDDLMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
MRKSRYARTLHFMCIDPSDTYLHVKEIEKHLSIILYKMTPDDLMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
Nucleotide
Download Length: 648 bp
>NTDB_id=1080237 ACJ3Y0_RS06870 WP_060982966.1 1546745..1547392(+) (qstR) [Vibrio sp. BS-M-Sm-2]
ATGAGAAAGTCTCGATATGCTCGCACTTTACACTTTATGTGCATCGATCCAAGCGACACCTACCTACACGTAAAAGAGAT
AGAAAAGCACTTATCTATTATCCTTTATAAGATGACACCGGACGATTTAATGCTTGTTGATAGAAAACAGAGTAACCGAA
TCTTGCTCGTCGATTACAGAGAGGTACCACAACTACTGATTATTTGCCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTACCCCAGCAACTTCCAACCTCAGAGCTGCTTACCTATGGGGTACTAAAAGGACTCTTTTACAA
CACTGAACAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCAAGGAAGGTAACCA
ATCAACTGTTGTTTTATTATCGTAATATGGTCAATACCAACACGACACCAACCAATGTTGATTTAACCATTCGTGAGATC
CAAGTGATTCGCTGCCTTCAATCAGGGTCATCAAACACACAAATCGCCGATGACTTGTTTATTAGTGAGTTCACGGTTAA
ATCTCACCTTTATCAAATATTCCGGAAGTTGGCAGTCAAAAATAGGGTTCAAGCCATTGCTTGGGCAAACCAGAACCTAC
TTGCATAA
ATGAGAAAGTCTCGATATGCTCGCACTTTACACTTTATGTGCATCGATCCAAGCGACACCTACCTACACGTAAAAGAGAT
AGAAAAGCACTTATCTATTATCCTTTATAAGATGACACCGGACGATTTAATGCTTGTTGATAGAAAACAGAGTAACCGAA
TCTTGCTCGTCGATTACAGAGAGGTACCACAACTACTGATTATTTGCCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTACCCCAGCAACTTCCAACCTCAGAGCTGCTTACCTATGGGGTACTAAAAGGACTCTTTTACAA
CACTGAACAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCAAGGAAGGTAACCA
ATCAACTGTTGTTTTATTATCGTAATATGGTCAATACCAACACGACACCAACCAATGTTGATTTAACCATTCGTGAGATC
CAAGTGATTCGCTGCCTTCAATCAGGGTCATCAAACACACAAATCGCCGATGACTTGTTTATTAGTGAGTTCACGGTTAA
ATCTCACCTTTATCAAATATTCCGGAAGTTGGCAGTCAAAAATAGGGTTCAAGCCATTGCTTGGGCAAACCAGAACCTAC
TTGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio campbellii strain DS40M4 |
53.023 |
100 |
0.53 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
52.558 |
100 |
0.526 |
| qstR | Vibrio cholerae strain A1552 |
48.131 |
99.535 |
0.479 |