Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACJ3W8_RS13180 | Genome accession | NZ_CP176466 |
| Coordinates | 2748563..2749699 (-) | Length | 378 a.a. |
| NCBI ID | WP_409423902.1 | Uniprot ID | - |
| Organism | Pseudoalteromonas sp. RW-H-Ap-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2743563..2754699
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ3W8_RS13150 (ACJ3W8_13150) | - | 2743953..2744846 (+) | 894 | WP_409423896.1 | hypothetical protein | - |
| ACJ3W8_RS13155 (ACJ3W8_13155) | - | 2744924..2745397 (+) | 474 | WP_409423897.1 | hypothetical protein | - |
| ACJ3W8_RS13160 (ACJ3W8_13160) | rsmE | 2745468..2746202 (+) | 735 | WP_409423898.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| ACJ3W8_RS13165 (ACJ3W8_13165) | gshB | 2746257..2747207 (+) | 951 | WP_409423899.1 | glutathione synthase | - |
| ACJ3W8_RS13170 (ACJ3W8_13170) | - | 2747335..2747892 (+) | 558 | WP_409423900.1 | YqgE/AlgH family protein | - |
| ACJ3W8_RS13175 (ACJ3W8_13175) | ruvX | 2747910..2748359 (+) | 450 | WP_409423901.1 | Holliday junction resolvase RuvX | - |
| ACJ3W8_RS13180 (ACJ3W8_13180) | pilU | 2748563..2749699 (-) | 1137 | WP_409423902.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACJ3W8_RS13185 (ACJ3W8_13185) | pilT | 2749709..2750749 (-) | 1041 | WP_409423903.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACJ3W8_RS13190 (ACJ3W8_13190) | - | 2750752..2751465 (+) | 714 | WP_409423904.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACJ3W8_RS13195 (ACJ3W8_13195) | proC | 2751483..2752304 (+) | 822 | WP_409423905.1 | pyrroline-5-carboxylate reductase | - |
| ACJ3W8_RS13200 (ACJ3W8_13200) | - | 2752331..2752864 (+) | 534 | WP_409423906.1 | YggT family protein | - |
| ACJ3W8_RS13205 (ACJ3W8_13205) | - | 2752922..2753365 (+) | 444 | WP_058549460.1 | DUF4426 domain-containing protein | - |
| ACJ3W8_RS13210 (ACJ3W8_13210) | - | 2753370..2753969 (+) | 600 | WP_303441585.1 | XTP/dITP diphosphatase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42004.01 Da Isoelectric Point: 6.1380
>NTDB_id=1080169 ACJ3W8_RS13180 WP_409423902.1 2748563..2749699(-) (pilU) [Pseudoalteromonas sp. RW-H-Ap-1]
MNLSLNHFLLIMIEKKGSDLFVSSQLPVSAKINGELTPLNDDKLTDEQALELVESAMSEKQKNEFHTTKECNFAIATDEG
RFRISAFWQRDRAGMVIRRIVTQIPDVKELGLPSALTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRNQRGHILTIE
DPIEFVHEHKKSIITQREVGLDTESFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDR
IMHLVPKEKHDKLKYDLALNLRAIIAQQLIPTSDGEGRAAAIEVLLNTPMVSELIKNGNIGGIKETMAKSTEMGMQTFDQ
ALFELYRQQRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLDDKGNIT
MNLSLNHFLLIMIEKKGSDLFVSSQLPVSAKINGELTPLNDDKLTDEQALELVESAMSEKQKNEFHTTKECNFAIATDEG
RFRISAFWQRDRAGMVIRRIVTQIPDVKELGLPSALTDVIMSKRGLVLFVGGTGTGKSTSLAALIGYRNRNQRGHILTIE
DPIEFVHEHKKSIITQREVGLDTESFESALKSSLRQAPDVILIGEIRSQETMEYALSFAETGHLCVATLHANNANQAIDR
IMHLVPKEKHDKLKYDLALNLRAIIAQQLIPTSDGEGRAAAIEVLLNTPMVSELIKNGNIGGIKETMAKSTEMGMQTFDQ
ALFELYRQQRINYADALHHADSPNDLRLMIKLRNNEQQGAGFLQGVTIDGLDDKGNIT
Nucleotide
Download Length: 1137 bp
>NTDB_id=1080169 ACJ3W8_RS13180 WP_409423902.1 2748563..2749699(-) (pilU) [Pseudoalteromonas sp. RW-H-Ap-1]
ATGAATTTATCTTTAAACCACTTTTTACTCATTATGATTGAAAAAAAAGGCTCTGATTTATTTGTATCGAGCCAATTGCC
AGTTAGCGCTAAAATTAATGGTGAGCTCACACCTCTTAATGATGACAAACTAACCGATGAGCAAGCGCTGGAATTAGTTG
AATCAGCGATGAGTGAAAAGCAAAAAAACGAATTTCATACCACTAAAGAGTGTAACTTTGCGATAGCCACAGATGAAGGG
CGCTTTCGTATATCTGCTTTTTGGCAACGCGATAGAGCGGGTATGGTTATTCGCCGTATTGTTACACAAATACCTGATGT
AAAAGAACTTGGATTGCCCTCAGCGCTTACTGATGTGATTATGTCAAAGCGCGGACTGGTATTATTTGTCGGTGGTACGG
GAACAGGTAAATCAACCTCTTTGGCGGCGCTTATTGGTTATAGAAATCGTAATCAACGAGGGCATATTTTAACTATAGAA
GATCCCATTGAGTTTGTGCATGAACATAAAAAAAGCATTATTACTCAACGTGAAGTGGGCTTAGATACAGAAAGTTTTGA
ATCGGCGCTTAAAAGCTCGTTGCGACAAGCTCCCGATGTAATATTAATTGGTGAAATACGTTCGCAAGAAACCATGGAGT
ATGCGCTTAGTTTTGCTGAAACCGGTCATTTATGTGTTGCTACATTGCACGCTAACAATGCAAACCAAGCGATTGACCGT
ATTATGCATTTGGTACCAAAAGAAAAGCACGACAAGCTTAAATATGATTTAGCATTAAACTTACGCGCTATTATTGCCCA
GCAGCTTATCCCAACCTCTGATGGGGAGGGACGTGCTGCTGCTATAGAGGTATTATTGAATACGCCAATGGTGAGTGAGC
TGATTAAAAACGGTAACATTGGTGGTATTAAAGAAACTATGGCCAAATCAACTGAAATGGGCATGCAAACTTTTGACCAA
GCGTTATTTGAGCTTTATAGACAGCAACGTATTAACTACGCCGATGCACTACATCATGCTGATTCGCCAAACGATTTACG
TTTAATGATTAAGCTACGTAATAACGAGCAGCAAGGCGCAGGCTTTTTGCAAGGCGTTACTATTGATGGTCTTGATGATA
AAGGTAATATTACCTAA
ATGAATTTATCTTTAAACCACTTTTTACTCATTATGATTGAAAAAAAAGGCTCTGATTTATTTGTATCGAGCCAATTGCC
AGTTAGCGCTAAAATTAATGGTGAGCTCACACCTCTTAATGATGACAAACTAACCGATGAGCAAGCGCTGGAATTAGTTG
AATCAGCGATGAGTGAAAAGCAAAAAAACGAATTTCATACCACTAAAGAGTGTAACTTTGCGATAGCCACAGATGAAGGG
CGCTTTCGTATATCTGCTTTTTGGCAACGCGATAGAGCGGGTATGGTTATTCGCCGTATTGTTACACAAATACCTGATGT
AAAAGAACTTGGATTGCCCTCAGCGCTTACTGATGTGATTATGTCAAAGCGCGGACTGGTATTATTTGTCGGTGGTACGG
GAACAGGTAAATCAACCTCTTTGGCGGCGCTTATTGGTTATAGAAATCGTAATCAACGAGGGCATATTTTAACTATAGAA
GATCCCATTGAGTTTGTGCATGAACATAAAAAAAGCATTATTACTCAACGTGAAGTGGGCTTAGATACAGAAAGTTTTGA
ATCGGCGCTTAAAAGCTCGTTGCGACAAGCTCCCGATGTAATATTAATTGGTGAAATACGTTCGCAAGAAACCATGGAGT
ATGCGCTTAGTTTTGCTGAAACCGGTCATTTATGTGTTGCTACATTGCACGCTAACAATGCAAACCAAGCGATTGACCGT
ATTATGCATTTGGTACCAAAAGAAAAGCACGACAAGCTTAAATATGATTTAGCATTAAACTTACGCGCTATTATTGCCCA
GCAGCTTATCCCAACCTCTGATGGGGAGGGACGTGCTGCTGCTATAGAGGTATTATTGAATACGCCAATGGTGAGTGAGC
TGATTAAAAACGGTAACATTGGTGGTATTAAAGAAACTATGGCCAAATCAACTGAAATGGGCATGCAAACTTTTGACCAA
GCGTTATTTGAGCTTTATAGACAGCAACGTATTAACTACGCCGATGCACTACATCATGCTGATTCGCCAAACGATTTACG
TTTAATGATTAAGCTACGTAATAACGAGCAGCAAGGCGCAGGCTTTTTGCAAGGCGTTACTATTGATGGTCTTGATGATA
AAGGTAATATTACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
57.6 |
99.206 |
0.571 |
| pilU | Acinetobacter baylyi ADP1 |
57.294 |
99.735 |
0.571 |
| pilU | Vibrio cholerae strain A1552 |
56.131 |
97.09 |
0.545 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.828 |
95.503 |
0.399 |