Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACKWPP_RS07965 Genome accession   NZ_CP176418
Coordinates   1561042..1561983 (-) Length   313 a.a.
NCBI ID   WP_024379668.1    Uniprot ID   A0A0Z8JMW9
Organism   Streptococcus suis strain KKAHC02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1556042..1566983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS07940 (ACKWPP_07940) prsA 1556147..1557148 (-) 1002 WP_409373775.1 peptidylprolyl isomerase PrsA -
  ACKWPP_RS07945 (ACKWPP_07945) - 1557210..1557929 (-) 720 WP_409373776.1 O-methyltransferase -
  ACKWPP_RS07950 (ACKWPP_07950) - 1558004..1558552 (-) 549 WP_409373777.1 DUF6630 family protein -
  ACKWPP_RS07955 (ACKWPP_07955) - 1558563..1559009 (-) 447 WP_409373778.1 hypothetical protein -
  ACKWPP_RS07960 (ACKWPP_07960) pepF 1559011..1560813 (-) 1803 WP_409373779.1 oligoendopeptidase F Regulator
  ACKWPP_RS07965 (ACKWPP_07965) coiA 1561042..1561983 (-) 942 WP_024379668.1 competence protein CoiA Machinery gene
  ACKWPP_RS07970 (ACKWPP_07970) metG 1562044..1564047 (-) 2004 WP_141587570.1 methionine--tRNA ligase -
  ACKWPP_RS07975 (ACKWPP_07975) - 1564289..1565038 (-) 750 WP_024401788.1 hypothetical protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36393.01 Da        Isoelectric Point: 7.3707

>NTDB_id=1080068 ACKWPP_RS07965 WP_024379668.1 1561042..1561983(-) (coiA) [Streptococcus suis strain KKAHC02]
MLVALDEDGQVFNVLENPAPQGRFCCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESVQHLSLKSCLYSWLINDEQ
VELEKCLPSIGQVADLFVNDRLALEVQCSSLPISRLQVRTQAYHEAGLQVLWLLGKGLWLKERLSKLHKQFLSFSMNMGF
YLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLSPVYQDFDQYYDSIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1080068 ACKWPP_RS07965 WP_024379668.1 1561042..1561983(-) (coiA) [Streptococcus suis strain KKAHC02]
ATGTTAGTTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTTTTGCTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCACGTAACCCTGCGGGACTGCA
CATACTTTTCCGAGAATGAGTCGGTCCAGCACCTGTCCCTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGACGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTCAATGATCGTTTAGCCTTGGAAGTACA
GTGTTCCAGTCTACCCATTTCTCGTTTGCAGGTAAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGTTAAAAGAAAGATTAAGCAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
TACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCATGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGTGAGGGAAATTTATTGGAAATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTACAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAAGTCCAGTCTATCAGGATTTTGACCAGTATTACGACA
GTATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8JMW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.526

99.681

0.534
  coiA Streptococcus pneumoniae TIGR4

51.282

99.681

0.511
  coiA Streptococcus pneumoniae Rx1

51.282

99.681

0.511
  coiA Streptococcus pneumoniae D39

51.282

99.681

0.511
  coiA Streptococcus pneumoniae R6

51.282

99.681

0.511
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428

Multiple sequence alignment