Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACKWPP_RS07960 Genome accession   NZ_CP176418
Coordinates   1559011..1560813 (-) Length   600 a.a.
NCBI ID   WP_409373779.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554011..1565813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS07935 (ACKWPP_07935) - 1555453..1555938 (-) 486 WP_044668712.1 LURP-one-related/scramblase family protein -
  ACKWPP_RS07940 (ACKWPP_07940) prsA 1556147..1557148 (-) 1002 WP_409373775.1 peptidylprolyl isomerase PrsA -
  ACKWPP_RS07945 (ACKWPP_07945) - 1557210..1557929 (-) 720 WP_409373776.1 O-methyltransferase -
  ACKWPP_RS07950 (ACKWPP_07950) - 1558004..1558552 (-) 549 WP_409373777.1 DUF6630 family protein -
  ACKWPP_RS07955 (ACKWPP_07955) - 1558563..1559009 (-) 447 WP_409373778.1 hypothetical protein -
  ACKWPP_RS07960 (ACKWPP_07960) pepF 1559011..1560813 (-) 1803 WP_409373779.1 oligoendopeptidase F Regulator
  ACKWPP_RS07965 (ACKWPP_07965) coiA 1561042..1561983 (-) 942 WP_024379668.1 competence protein CoiA Machinery gene
  ACKWPP_RS07970 (ACKWPP_07970) metG 1562044..1564047 (-) 2004 WP_141587570.1 methionine--tRNA ligase -
  ACKWPP_RS07975 (ACKWPP_07975) - 1564289..1565038 (-) 750 WP_024401788.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69133.29 Da        Isoelectric Point: 4.5509

>NTDB_id=1080067 ACKWPP_RS07960 WP_409373779.1 1559011..1560813(-) (pepF) [Streptococcus suis strain KKAHC02]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTTISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1080067 ACKWPP_RS07960 WP_409373779.1 1559011..1560813(-) (pepF) [Streptococcus suis strain KKAHC02]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGACTTGACCACTATTTTCCCAACAGATGAAGCCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCACTTGCTCGACTCAGCGAAGAGCC
TTTTGACAATCAGCGAAACGCAACTTGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTCTAGCAGCCAAGGACCATGTCCTGTCACAAGAGGTCGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGAAGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACTCTGCAATCTAATGTCAAAGTCAAT
AACCTGAAAGCTCGTTTACGGAAGTACGACTCAGCTCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCACGATTTCTTATGAAGATGCACTCAAG
AAATGTCAAGAAACCTTGGAAATCTTCGGTGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAATCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAATT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAGGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACTAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ATAAGATTGTCAATGGCAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.5

100

0.695

Multiple sequence alignment