Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACKPXQ_RS11875 Genome accession   NZ_CP176038
Coordinates   2475180..2475488 (-) Length   102 a.a.
NCBI ID   WP_014418376.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2470180..2480488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS11825 (ACKPXQ_11825) sinR 2470342..2470677 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACKPXQ_RS11830 (ACKPXQ_11830) tasA 2470725..2471510 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACKPXQ_RS11835 (ACKPXQ_11835) sipW 2471576..2472160 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ACKPXQ_RS11840 (ACKPXQ_11840) tapA 2472132..2472803 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  ACKPXQ_RS11845 (ACKPXQ_11845) - 2473062..2473391 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  ACKPXQ_RS11850 (ACKPXQ_11850) - 2473432..2473611 (-) 180 WP_003153093.1 YqzE family protein -
  ACKPXQ_RS11855 (ACKPXQ_11855) comGG 2473668..2474045 (-) 378 WP_053284923.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACKPXQ_RS11860 (ACKPXQ_11860) comGF 2474046..2474441 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  ACKPXQ_RS11865 (ACKPXQ_11865) comGE 2474455..2474769 (-) 315 WP_088056452.1 competence type IV pilus minor pilin ComGE -
  ACKPXQ_RS11870 (ACKPXQ_11870) comGD 2474753..2475190 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACKPXQ_RS11875 (ACKPXQ_11875) comGC 2475180..2475488 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  ACKPXQ_RS11880 (ACKPXQ_11880) comGB 2475493..2476530 (-) 1038 WP_053284924.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACKPXQ_RS11885 (ACKPXQ_11885) comGA 2476517..2477587 (-) 1071 WP_014418378.1 competence type IV pilus ATPase ComGA Machinery gene
  ACKPXQ_RS11890 (ACKPXQ_11890) - 2477780..2478730 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -
  ACKPXQ_RS11895 (ACKPXQ_11895) - 2478876..2480177 (+) 1302 WP_029973873.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11400.33 Da        Isoelectric Point: 6.4507

>NTDB_id=1079520 ACKPXQ_RS11875 WP_014418376.1 2475180..2475488(-) (comGC) [Bacillus velezensis strain A4]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQRKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=1079520 ACKPXQ_RS11875 WP_014418376.1 2475180..2475488(-) (comGC) [Bacillus velezensis strain A4]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCGTAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

76.289

95.098

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment