Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACKPXQ_RS11825 Genome accession   NZ_CP176038
Coordinates   2470342..2470677 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2465342..2475677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS11805 (ACKPXQ_11805) gcvT 2465948..2467048 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  ACKPXQ_RS11810 (ACKPXQ_11810) - 2467472..2469142 (+) 1671 WP_038461530.1 DEAD/DEAH box helicase -
  ACKPXQ_RS11815 (ACKPXQ_11815) - 2469164..2469958 (+) 795 WP_014418368.1 YqhG family protein -
  ACKPXQ_RS11820 (ACKPXQ_11820) sinI 2470135..2470308 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  ACKPXQ_RS11825 (ACKPXQ_11825) sinR 2470342..2470677 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACKPXQ_RS11830 (ACKPXQ_11830) tasA 2470725..2471510 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACKPXQ_RS11835 (ACKPXQ_11835) sipW 2471576..2472160 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ACKPXQ_RS11840 (ACKPXQ_11840) tapA 2472132..2472803 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  ACKPXQ_RS11845 (ACKPXQ_11845) - 2473062..2473391 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  ACKPXQ_RS11850 (ACKPXQ_11850) - 2473432..2473611 (-) 180 WP_003153093.1 YqzE family protein -
  ACKPXQ_RS11855 (ACKPXQ_11855) comGG 2473668..2474045 (-) 378 WP_053284923.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACKPXQ_RS11860 (ACKPXQ_11860) comGF 2474046..2474441 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  ACKPXQ_RS11865 (ACKPXQ_11865) comGE 2474455..2474769 (-) 315 WP_088056452.1 competence type IV pilus minor pilin ComGE -
  ACKPXQ_RS11870 (ACKPXQ_11870) comGD 2474753..2475190 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACKPXQ_RS11875 (ACKPXQ_11875) comGC 2475180..2475488 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1079517 ACKPXQ_RS11825 WP_003153104.1 2470342..2470677(+) (sinR) [Bacillus velezensis strain A4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1079517 ACKPXQ_RS11825 WP_003153104.1 2470342..2470677(+) (sinR) [Bacillus velezensis strain A4]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment