Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACKN8R_RS01855 Genome accession   NZ_CP176031
Coordinates   385559..387082 (+) Length   507 a.a.
NCBI ID   WP_193282530.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain L2171     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380559..392082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKN8R_RS01840 (ACKN8R_01840) ilvE 382202..383140 (-) 939 WP_015297538.1 branched-chain-amino-acid transaminase -
  ACKN8R_RS01845 (ACKN8R_01845) ilvM 383153..383437 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  ACKN8R_RS01850 (ACKN8R_01850) ilvG 383448..385094 (-) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  ACKN8R_RS01855 (ACKN8R_01855) comM 385559..387082 (+) 1524 WP_193282530.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACKN8R_RS01860 (ACKN8R_01860) - 387139..388095 (-) 957 WP_025506753.1 DUF2860 domain-containing protein -
  ACKN8R_RS01865 (ACKN8R_01865) - 388258..389136 (+) 879 WP_020904428.1 acyltransferase -
  ACKN8R_RS01870 (ACKN8R_01870) - 389178..389780 (-) 603 WP_193282532.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACKN8R_RS01875 (ACKN8R_01875) - 389815..390801 (-) 987 WP_020839880.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54986.03 Da        Isoelectric Point: 8.4875

>NTDB_id=1079394 ACKN8R_RS01855 WP_193282530.1 385559..387082(+) (comM) [Vibrio parahaemolyticus strain L2171]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEALCPLQKSDAEFLETALHRLGLSIRAYHRIIRVARTIADLEGAEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1079394 ACKN8R_RS01855 WP_193282530.1 385559..387082(+) (comM) [Vibrio parahaemolyticus strain L2171]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTGGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCAGCCGCGTTGGCTGCAAGTAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTTCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCATCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTAGAG
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
GAGCCCTACGGGCTATTATGAAGGGAATCAAGCGCGTACCAATCCTCAGGCCATTTTGCGTTATTTGGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACGGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTGCTTGGCAGCCGTGAGATTGAGGCACTTTGTCCGTTGCAAAAAAGCGATGCGGAGTTTCTCGAAACTGCACTCCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAGAGTGGCCCGCACTATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAACGTTCTCATTTAGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTTACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.886

100

0.939
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment