Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACKQF3_RS05185 | Genome accession | NZ_CP175806 |
| Coordinates | 1091795..1092106 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain N19-2759 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1086795..1097106
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKQF3_RS05170 (ACKQF3_05170) | lon | 1086832..1089192 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| ACKQF3_RS05175 (ACKQF3_05175) | - | 1089376..1089648 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| ACKQF3_RS05180 (ACKQF3_05180) | ppiD | 1089801..1091660 (+) | 1860 | WP_032470896.1 | peptidylprolyl isomerase | - |
| ACKQF3_RS05185 (ACKQF3_05185) | comEA | 1091795..1092106 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| ACKQF3_RS05190 (ACKQF3_05190) | cmk | 1092289..1092966 (+) | 678 | WP_000094751.1 | (d)CMP kinase | - |
| ACKQF3_RS05195 (ACKQF3_05195) | rpsA | 1093075..1094745 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| ACKQF3_RS05200 (ACKQF3_05200) | ihfB | 1095034..1095312 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| ACKQF3_RS05205 (ACKQF3_05205) | - | 1095451..1095732 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| ACKQF3_RS05210 (ACKQF3_05210) | lapB | 1095744..1096913 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=1078972 ACKQF3_RS05185 WP_001166105.1 1091795..1092106(+) (comEA) [Vibrio cholerae strain N19-2759]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=1078972 ACKQF3_RS05185 WP_001166105.1 1091795..1092106(+) (comEA) [Vibrio cholerae strain N19-2759]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTTTGCCTACCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAAAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTTTGCCTACCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAAAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |