Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACJ23B_RS15870 Genome accession   NZ_CP175653
Coordinates   3158974..3160461 (-) Length   495 a.a.
NCBI ID   WP_000010466.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NIH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3153974..3165461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ23B_RS15845 (ACJ23B_15865) - 3154661..3154832 (+) 172 Protein_2948 hypothetical protein -
  ACJ23B_RS15850 (ACJ23B_15870) - 3154889..3155701 (+) 813 WP_000975212.1 TorF family putative porin -
  ACJ23B_RS15855 (ACJ23B_15875) - 3155744..3156622 (-) 879 WP_000772976.1 dihydrodipicolinate synthase family protein -
  ACJ23B_RS15860 (ACJ23B_15880) - 3156637..3157413 (-) 777 WP_000845026.1 aldolase -
  ACJ23B_RS15865 (ACJ23B_15885) - 3157525..3158977 (+) 1453 Protein_2952 PLP-dependent aminotransferase family protein -
  ACJ23B_RS15870 (ACJ23B_15890) comM 3158974..3160461 (-) 1488 WP_000010466.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACJ23B_RS15875 (ACJ23B_15895) - 3160527..3160754 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  ACJ23B_RS15880 (ACJ23B_15900) glnK 3161034..3161372 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  ACJ23B_RS15885 (ACJ23B_15905) - 3161430..3162827 (+) 1398 WP_000738520.1 ammonium transporter -
  ACJ23B_RS15890 (ACJ23B_15910) nrdR 3162985..3163443 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  ACJ23B_RS15895 (ACJ23B_15915) ribD 3163459..3164544 (+) 1086 WP_001292506.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54490.30 Da        Isoelectric Point: 7.1258

>NTDB_id=1078497 ACJ23B_RS15870 WP_000010466.1 3158974..3160461(-) (comM) [Acinetobacter baumannii strain NIH1]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSDHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSNSVRQRVISAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1078497 ACJ23B_RS15870 WP_000010466.1 3158974..3160461(-) (comM) [Acinetobacter baumannii strain NIH1]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGACCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGCCATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGCATATCGGGGC
CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA
GACTCCAATAGTGTTCGACAACGTGTGATTTCTGCTTATGAGCAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCGCCCAAACAACTGGAACAATATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCTGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471

Multiple sequence alignment