Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilM   Type   Machinery gene
Locus tag   ACJ228_RS07695 Genome accession   NZ_CP175642
Coordinates   1610663..1611721 (-) Length   352 a.a.
NCBI ID   WP_002014066.1    Uniprot ID   N9LI98
Organism   Acinetobacter baumannii strain G7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1605663..1616721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ228_RS07670 (ACJ228_07670) aroK 1605938..1606507 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACJ228_RS07675 (ACJ228_07675) pilQ 1606519..1608684 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  ACJ228_RS07680 (ACJ228_07680) pilP 1608747..1609274 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  ACJ228_RS07685 (ACJ228_07685) pilO 1609285..1610025 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJ228_RS07690 (ACJ228_07690) pilN 1610022..1610663 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  ACJ228_RS07695 (ACJ228_07695) pilM 1610663..1611721 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACJ228_RS07700 (ACJ228_07700) ponA 1611883..1614438 (+) 2556 WP_000736662.1 penicillin-binding protein PBP1a -
  ACJ228_RS07705 (ACJ228_07705) - 1614456..1615280 (-) 825 WP_001990541.1 putative RNA methyltransferase -
  ACJ228_RS07710 (ACJ228_07710) - 1615283..1615615 (-) 333 WP_000169598.1 hypothetical protein -

Sequence


Protein


Download         Length: 352 a.a.        Molecular weight: 39032.59 Da        Isoelectric Point: 4.4618

>NTDB_id=1078343 ACJ228_RS07695 WP_002014066.1 1610663..1611721(-) (pilM) [Acinetobacter baumannii strain G7]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1078343 ACJ228_RS07695 WP_002014066.1 1610663..1611721(-) (pilM) [Acinetobacter baumannii strain G7]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTGCCGGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACACGCGTTGAAGTGCTTGAATTG
GCAGATTTAAATCCTAAATTGGCTGATGTCGAAAGTTACGCGGTTGAGCGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGTCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTTTTCGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGCCGAGCAAAAAAAGATCGCTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCTAAGCTTTTGCAGCAAAAATTGGGCTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGATGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9LI98

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

100

100

1

  comM Acinetobacter nosocomialis M2

99.148

100

0.991

  comM Acinetobacter baylyi ADP1

81.534

100

0.815

  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423


Multiple sequence alignment