Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   ACJ228_RS07680 Genome accession   NZ_CP175642
Coordinates   1608747..1609274 (-) Length   175 a.a.
NCBI ID   WP_000695059.1    Uniprot ID   A0A0D5YDP9
Organism   Acinetobacter baumannii strain G7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1603747..1614274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ228_RS07660 (ACJ228_07660) - 1603936..1604811 (-) 876 WP_000218810.1 hypothetical protein -
  ACJ228_RS07665 (ACJ228_07665) aroB 1604827..1605909 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ACJ228_RS07670 (ACJ228_07670) aroK 1605938..1606507 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACJ228_RS07675 (ACJ228_07675) pilQ 1606519..1608684 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  ACJ228_RS07680 (ACJ228_07680) pilP 1608747..1609274 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  ACJ228_RS07685 (ACJ228_07685) pilO 1609285..1610025 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJ228_RS07690 (ACJ228_07690) pilN 1610022..1610663 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  ACJ228_RS07695 (ACJ228_07695) pilM 1610663..1611721 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19371.59 Da        Isoelectric Point: 9.0270

>NTDB_id=1078340 ACJ228_RS07680 WP_000695059.1 1608747..1609274(-) (pilP) [Acinetobacter baumannii strain G7]
MKIKQITLCVLASVVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1078340 ACJ228_RS07680 WP_000695059.1 1608747..1609274(-) (pilP) [Acinetobacter baumannii strain G7]
ATGAAAATTAAGCAAATTACTCTTTGTGTTTTGGCGAGTGTTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains


Predicted by InterproScan.

(27-170)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D5YDP9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.286

100

0.983

  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714


Multiple sequence alignment