Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OAG1_RS19265 Genome accession   NZ_AP028990
Coordinates   4236303..4237817 (-) Length   504 a.a.
NCBI ID   WP_338622384.1    Uniprot ID   -
Organism   Agarivorans sp. OAG1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4231303..4242817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAG1_RS19255 (OAG1_37470) recC 4231973..4235335 (-) 3363 WP_338622383.1 exodeoxyribonuclease V subunit gamma -
  OAG1_RS19260 (OAG1_37480) - 4235446..4235841 (-) 396 WP_016402299.1 hypothetical protein -
  OAG1_RS19265 (OAG1_37490) comM 4236303..4237817 (-) 1515 WP_338622384.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OAG1_RS19270 (OAG1_37500) - 4237899..4238312 (-) 414 WP_152783284.1 CBS domain-containing protein -
  OAG1_RS19275 (OAG1_37510) - 4238467..4239837 (-) 1371 WP_016402302.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme -
  OAG1_RS19280 (OAG1_37520) - 4240061..4240798 (+) 738 WP_338622385.1 sulfite exporter TauE/SafE family protein -
  OAG1_RS19285 (OAG1_37530) - 4240962..4241465 (+) 504 WP_016402305.1 hypothetical protein -
  OAG1_RS19290 (OAG1_37540) - 4241544..4242491 (-) 948 WP_338622386.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54080.94 Da        Isoelectric Point: 7.8899

>NTDB_id=107782 OAG1_RS19265 WP_338622384.1 4236303..4237817(-) (comM) [Agarivorans sp. OAG1]
MGLAIVKTCTLVGMEALNVTVEVHLANGLPAFSIVGLPETSVKEAKDRVRSAILNSGFSFPAKRITVNLAPADVPKSGGR
FDLPIAIGILAAAGDVPLACLNDMAFCGELALSGAIRPVSGAIATALSISHQGLTLVTSEQDADAAVRVPDAKVHGSASL
QQLSAGINGQSAFNLKDSQVIEPQFNESLLDMSEVQGQHLAKRALELAAAGAHNLIMMGPPGTGKTMLASRLPGILPSLT
EQQAIEVAAINSVSAQQRELEQWYIPPFRSPHHSASMVALVGGGSNPKPGEITLAHHGVLFLDELPEFARSTLDALRQPL
ESGEVHISRAALQVRFPSRFQLVAAMNPSPCGYYQGQQLRSNPDQILKYLGKLSGPFLDRFDLSVEVSELPKGSLTQHAQ
GESSAQIKQRVINARKLQLERSGKLNSQLSGKELHQHASLSLENSEFLESSISQLGLSARAFHRVWRLARTIADLKQQKD
IQRNDIVEALSYRAMDRLLKRLSA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=107782 OAG1_RS19265 WP_338622384.1 4236303..4237817(-) (comM) [Agarivorans sp. OAG1]
ATGGGTTTAGCGATAGTTAAAACGTGTACCTTAGTGGGCATGGAAGCCTTAAATGTTACTGTAGAAGTGCATTTAGCCAA
TGGTTTGCCCGCTTTTAGCATTGTAGGTTTACCAGAAACCTCGGTTAAAGAAGCTAAAGATAGAGTTCGTAGCGCCATTC
TCAATAGTGGCTTTTCCTTTCCAGCAAAACGCATTACCGTAAATCTAGCGCCTGCAGATGTTCCTAAAAGTGGAGGTCGC
TTTGATCTGCCAATTGCTATTGGTATTTTAGCTGCTGCTGGTGATGTTCCTCTAGCGTGTTTGAATGACATGGCGTTTTG
CGGTGAGCTGGCTTTATCAGGAGCAATTCGTCCAGTAAGCGGAGCAATTGCCACCGCCTTATCGATAAGCCATCAGGGTT
TAACCTTGGTGACTAGTGAGCAAGATGCCGACGCAGCGGTAAGAGTACCAGATGCTAAAGTACATGGCAGCGCCAGCTTG
CAGCAGTTAAGTGCAGGTATCAATGGCCAAAGCGCTTTTAACTTGAAGGACTCTCAAGTTATTGAGCCGCAGTTTAACGA
AAGCCTCTTAGATATGAGCGAAGTGCAAGGCCAGCATTTGGCTAAACGCGCGCTAGAGCTGGCAGCTGCAGGTGCACATA
ATCTGATAATGATGGGTCCTCCCGGTACCGGTAAAACTATGTTGGCGAGTCGCTTACCGGGCATATTACCTAGCTTAACC
GAGCAACAAGCCATAGAGGTGGCGGCAATAAATTCGGTAAGCGCTCAGCAACGAGAGCTAGAGCAATGGTACATTCCGCC
TTTTCGTAGCCCGCATCATAGCGCCTCAATGGTAGCGCTGGTGGGCGGTGGTTCAAACCCTAAGCCCGGCGAAATAACCT
TAGCCCATCATGGTGTGCTTTTTTTAGATGAGCTTCCTGAGTTTGCTCGCAGTACTTTAGACGCTTTGCGCCAGCCGCTA
GAGTCTGGCGAGGTGCATATTTCTCGTGCTGCTTTGCAGGTGCGCTTTCCTTCACGTTTCCAGTTGGTGGCGGCGATGAA
CCCTTCACCTTGTGGCTACTATCAAGGTCAGCAGTTACGCAGTAATCCCGACCAAATTTTAAAATATCTTGGCAAGCTAT
CGGGGCCATTTTTAGACCGCTTTGATTTAAGTGTTGAGGTATCTGAGTTACCCAAAGGCAGCTTAACTCAGCATGCTCAG
GGGGAGTCTAGTGCCCAGATAAAACAGCGGGTGATTAACGCGCGCAAGCTGCAGTTGGAGCGTAGTGGTAAGTTAAATAG
CCAACTCTCTGGTAAAGAGCTTCACCAGCATGCCAGTTTAAGCCTTGAAAATAGTGAATTTTTAGAAAGCAGTATTAGCC
AATTAGGTTTATCTGCTCGCGCATTTCATCGCGTTTGGCGCTTAGCCAGAACCATTGCCGATCTTAAGCAACAAAAAGAT
ATTCAACGCAATGACATTGTGGAAGCACTAAGCTATCGAGCAATGGATCGCTTACTTAAGCGTTTGTCTGCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.653

100

0.548
  comM Haemophilus influenzae Rd KW20

53.452

100

0.538
  comM Vibrio campbellii strain DS40M4

53.465

100

0.536
  comM Glaesserella parasuis strain SC1401

52.372

100

0.526
  comM Legionella pneumophila str. Paris

46.813

99.603

0.466
  comM Legionella pneumophila strain ERS1305867

46.813

99.603

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.178

100

0.423

Multiple sequence alignment