Detailed information NTG0107766

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: OAG1_RS04475
• Genome accession: NZ_AP028990
• Coordinates: 961439..962557 (+)
• Length: 372 a.a.
• NCBI ID: WP_338624336.1
• Uniprot ID: -
• Organism: Agarivorans sp. OAG1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 956439..967557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OAG1_RS04445 (OAG1_08700)	-	957316..957750 (-)	435	WP_338624328.1	DUF4426 domain-containing protein	-
OAG1_RS04450 (OAG1_08710)	yggU	957809..958099 (-)	291	WP_338624330.1	DUF167 family protein YggU	-
OAG1_RS04455 (OAG1_08720)	-	958100..958645 (-)	546	WP_016401374.1	YggT family protein	-
OAG1_RS04460 (OAG1_08730)	proC	958663..959484 (-)	822	WP_338624332.1	pyrroline-5-carboxylate reductase	-
OAG1_RS04465 (OAG1_08740)	-	959672..960370 (-)	699	WP_338624334.1	YggS family pyridoxal phosphate-dependent enzyme	-
OAG1_RS04470 (OAG1_08750)	pilT	960396..961430 (+)	1035	WP_016401371.1	type IV pilus twitching motility protein PilT	Machinery gene
OAG1_RS04475 (OAG1_08760)	pilU	961439..962557 (+)	1119	WP_338624336.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
OAG1_RS04480 (OAG1_08770)	yaaA	962575..963354 (+)	780	WP_338624338.1	peroxide stress protein YaaA	-
OAG1_RS04485 (OAG1_08780)	-	963510..963977 (+)	468	WP_338624340.1	hypothetical protein	-
OAG1_RS04490 (OAG1_08790)	-	964186..964929 (+)	744	WP_016401367.1	OmpA family protein	-
OAG1_RS04495 (OAG1_08800)	srmB	964992..966248 (-)	1257	WP_016401366.1	ATP-dependent RNA helicase SrmB	-
OAG1_RS04500 (OAG1_08810)	-	966346..967068 (+)	723	WP_338624343.1	methyltransferase	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41579.73 Da
• Isoelectric Point: 6.0915

>NTDB_id=107766 OAG1_RS04475 WP_338624336.1 961439..962557(+) (pilU) [Agarivorans sp. OAG1]
MLLDELLSDMSERKASDLYLSVGVPPSAKVSGRLMPLTEQKLMPEHVMDMLAAIRSEAQLEAFVTGREANFAIARQGLGR
YRVSAFYQREQPSMVIRRIETDIPSFEQLQLPQILKEVGMSKRGLILFVGATGAGKSTTQASMIDYRNHNSSGHILTIED
PVEFMHKHAGCIVNQREVGIDTPSFDEALKNSLRQAPDVILIGEIRTRETMEFALQFSETGHLCMATLHANNANQALDRI
MHLVPEERHRQLCFDLSFNLRAIVAQQLVPTKDGNGRRGVFEILLNTPLAADLIRKGDMHKLKELMSKSREQGMLTFDQS
LFELFESGVIGYTEAIAHADSPNDLRLMIKLHGTEKSNNLDSGMLDGVTVDF

Nucleotide

• Length: 1119 bp

>NTDB_id=107766 OAG1_RS04475 WP_338624336.1 961439..962557(+) (pilU) [Agarivorans sp. OAG1]
ATGTTACTCGATGAGCTATTAAGCGATATGTCGGAGCGTAAAGCATCCGATTTATATCTATCAGTTGGCGTGCCGCCTAG
CGCGAAAGTGAGTGGCCGTTTAATGCCGCTAACTGAGCAAAAACTAATGCCAGAGCATGTCATGGATATGCTGGCCGCCA
TTCGCTCAGAGGCTCAGCTAGAAGCCTTTGTTACTGGTCGTGAGGCAAACTTTGCCATCGCTCGCCAAGGCTTGGGCCGC
TACCGTGTGAGTGCTTTTTATCAACGCGAACAGCCAAGCATGGTAATTCGTCGTATTGAAACTGATATTCCCAGTTTTGA
GCAGCTGCAGTTGCCGCAAATTCTCAAAGAAGTAGGTATGTCGAAACGTGGTTTGATTCTGTTTGTTGGTGCGACCGGTG
CTGGTAAGTCAACCACTCAGGCCAGTATGATTGATTATCGCAATCACAATTCCAGTGGGCATATTCTTACCATTGAAGAC
CCGGTAGAATTTATGCACAAACATGCTGGTTGTATTGTTAACCAGCGTGAAGTGGGCATTGACACGCCGTCGTTTGATGA
AGCCTTGAAGAACTCATTGCGTCAAGCACCCGATGTGATTTTGATTGGTGAGATCCGTACCCGCGAGACCATGGAGTTTG
CGTTGCAATTCTCTGAAACGGGTCACTTATGTATGGCTACCTTGCACGCCAACAACGCTAACCAAGCCCTCGACCGGATT
ATGCACTTAGTGCCAGAAGAGCGTCATCGCCAACTGTGTTTTGACTTATCATTCAACCTACGTGCGATTGTGGCTCAGCA
GTTAGTGCCAACCAAAGATGGCAATGGCCGTCGCGGGGTATTTGAAATTTTACTTAATACACCTTTAGCCGCGGATCTAA
TTCGTAAAGGTGATATGCATAAGCTCAAAGAGTTAATGAGTAAATCCCGCGAACAGGGCATGTTAACCTTCGACCAAAGC
TTGTTTGAATTGTTCGAAAGTGGCGTAATTGGCTATACCGAAGCTATTGCCCATGCTGATTCACCTAACGATCTTCGTTT
GATGATTAAATTGCATGGCACCGAAAAATCGAATAATTTAGACAGCGGAATGTTAGACGGTGTTACCGTCGATTTTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (112-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	58.871	100	0.589
pilU	Vibrio cholerae strain A1552	56.452	100	0.565
pilU	Acinetobacter baylyi ADP1	57.382	96.505	0.554
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.691	92.204	0.384