Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ACJKN5_RS04080 Genome accession   NZ_CP174516
Coordinates   790598..791737 (+) Length   379 a.a.
NCBI ID   WP_014325193.1    Uniprot ID   A0A5M8XCI1
Organism   Leuconostoc mesenteroides strain HY303     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 785598..796737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJKN5_RS04060 yycF 785755..786462 (+) 708 WP_010281559.1 response regulator YycF -
  ACJKN5_RS04065 walK 786530..788395 (+) 1866 WP_025268546.1 cell wall metabolism sensor histidine kinase WalK -
  ACJKN5_RS04070 - 788385..789677 (+) 1293 WP_025268545.1 hypothetical protein -
  ACJKN5_RS04075 yycI 789734..790537 (+) 804 WP_010289058.1 two-component system regulatory protein YycI -
  ACJKN5_RS04080 htrA 790598..791737 (+) 1140 WP_014325193.1 S1C family serine protease Regulator
  ACJKN5_RS04085 rlmH 792367..792846 (+) 480 WP_011680487.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACJKN5_RS04090 - 792940..795105 (+) 2166 WP_025268544.1 YhgE/Pip domain-containing protein -
  ACJKN5_RS04095 - 795159..795611 (+) 453 WP_011680485.1 Rrf2 family transcriptional regulator -
  ACJKN5_RS04100 - 795696..796361 (-) 666 WP_010285559.1 NAD(P)H-hydrate epimerase -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 39210.48 Da        Isoelectric Point: 9.7777

>NTDB_id=1077612 ACJKN5_RS04080 WP_014325193.1 790598..791737(+) (htrA) [Leuconostoc mesenteroides strain HY303]
MVQSALTKTLLTGVIAGVVGGGAILYGQQGVQLLQNQNQKVSTTATSTKTIAKNATATSAYNKVSDAVVSVLNFTKSSQG
SYQESSEGSGVIYKKTDGSAFIVTNNHVITGAAKIQVMLHSGKKVTATLVGKDAMTDLAVLKIDGTDVTTTAQFGDSSKI
TVGENVLAIGSPLGSEYASSVTQGIISAKKRLVEATSENGQNYGGSTVIQTDAAINPGNSGGPLINFAGQVIGINSMKLS
TSSSGTSVEGMGFAIPSDQVVDIVNKLVKDGKVTRPAIGISLINLSEVTASEQKSTLKIPDSVTGGVVVMSLTNNGPADK
AGLKKYDVIVGINGKKVSSQADLREELYKHSLGDTITLTYYHQDTKQTVKVKLTQKLAS

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1077612 ACJKN5_RS04080 WP_014325193.1 790598..791737(+) (htrA) [Leuconostoc mesenteroides strain HY303]
ATGGTACAATCAGCATTAACAAAAACGTTGTTAACTGGCGTCATTGCTGGTGTTGTTGGTGGAGGAGCAATTTTGTATGG
GCAGCAGGGTGTACAATTGTTACAAAATCAAAATCAAAAAGTGAGTACGACAGCAACAAGTACAAAAACGATTGCCAAGA
ATGCAACTGCTACATCAGCTTATAATAAGGTATCAGATGCAGTTGTATCTGTATTGAACTTTACTAAATCCAGTCAAGGT
AGTTATCAAGAATCGTCAGAAGGTTCTGGCGTGATCTATAAAAAAACGGATGGATCGGCATTTATTGTAACGAATAATCA
CGTAATCACTGGAGCGGCTAAAATTCAAGTTATGCTGCACAGTGGGAAGAAAGTGACCGCTACATTAGTCGGCAAAGATG
CGATGACTGACTTAGCTGTTCTGAAAATCGACGGCACAGACGTTACAACAACTGCACAATTTGGCGATTCAAGTAAAATA
ACTGTTGGTGAAAATGTCTTGGCAATTGGTTCGCCGCTGGGATCTGAGTATGCTTCGTCAGTGACGCAAGGCATCATTTC
GGCCAAGAAAAGGTTAGTTGAGGCAACATCTGAAAATGGTCAAAATTATGGTGGATCCACGGTTATTCAGACGGATGCTG
CTATTAATCCTGGTAACTCAGGTGGACCATTAATCAACTTTGCAGGACAAGTTATTGGTATTAACTCAATGAAGTTATCA
ACATCTTCTTCTGGAACGAGCGTTGAGGGGATGGGTTTTGCAATTCCTTCTGATCAAGTCGTTGACATTGTTAACAAATT
AGTCAAAGATGGTAAAGTCACACGACCAGCAATTGGCATTAGTTTGATTAATTTGTCAGAAGTAACAGCTTCTGAGCAAA
AATCAACACTGAAAATTCCAGATAGCGTTACTGGTGGTGTTGTTGTAATGAGTTTGACTAACAATGGCCCAGCAGATAAA
GCTGGATTGAAGAAGTACGACGTTATTGTTGGCATTAATGGTAAAAAGGTCAGCTCACAGGCTGATCTGCGAGAAGAACT
CTACAAGCATTCGCTTGGGGACACAATAACATTGACTTATTATCATCAGGATACTAAGCAAACCGTCAAGGTTAAATTAA
CACAGAAATTGGCAAGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5M8XCI1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

52.394

93.668

0.491

  htrA Streptococcus gordonii str. Challis substr. CH1

48.549

100

0.485

  htrA Streptococcus pneumoniae D39

52.924

90.237

0.478

  htrA Streptococcus pneumoniae TIGR4

52.924

90.237

0.478

  htrA Streptococcus pneumoniae R6

52.924

90.237

0.478

  htrA Streptococcus pneumoniae Rx1

52.924

90.237

0.478

  htrA Streptococcus mutans UA159

52.647

89.71

0.472


Multiple sequence alignment