Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJJWD_RS25240 Genome accession   NZ_CP174505
Coordinates   5539555..5540103 (-) Length   182 a.a.
NCBI ID   WP_407714668.1    Uniprot ID   -
Organism   Comamonas testosteroni strain VSPL.dLG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5534555..5545103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJWD_RS25220 (ACJJWD_25235) moaC 5535675..5536136 (+) 462 WP_407716353.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACJJWD_RS25225 (ACJJWD_25240) - 5536146..5537732 (-) 1587 WP_407714665.1 Wzy polymerase domain-containing protein -
  ACJJWD_RS25230 (ACJJWD_25245) pilA 5537899..5538333 (-) 435 WP_407714666.1 pilin Machinery gene
  ACJJWD_RS25235 (ACJJWD_25250) - 5538523..5539242 (-) 720 WP_407714667.1 FHA domain-containing protein -
  ACJJWD_RS25240 (ACJJWD_25255) ssb 5539555..5540103 (-) 549 WP_407714668.1 single-stranded DNA-binding protein Machinery gene
  ACJJWD_RS25245 (ACJJWD_25260) - 5540340..5541512 (-) 1173 WP_407716354.1 MFS transporter -
  ACJJWD_RS25250 (ACJJWD_25265) uvrA 5541739..5544807 (+) 3069 WP_407714669.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19958.13 Da        Isoelectric Point: 5.9469

>NTDB_id=1077460 ACJJWD_RS25240 WP_407714668.1 5539555..5540103(-) (ssb) [Comamonas testosteroni strain VSPL.dLG]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADIMQMLGSRQGGGQQQGGYGGDDGYGESSYQAPSRPAPAPMQQRPAPAPMQQRSAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1077460 ACJJWD_RS25240 WP_407714668.1 5539555..5540103(-) (ssb) [Comamonas testosteroni strain VSPL.dLG]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACGGACCGCTGGCGCGACAAGAACACCGGTGAAAACCGCGAAGCCACCGAATGGC
ACCGCGTGGTCTTCAACGGCAAGCTGGCCGAAATCGTGGGGCAGTATCTGCGCAAGGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGGAAATGGACCGATCAGGCCTCCGGCCAGGAGCGTTACGCCACCGAAATCCGCGCCGACATCATGCA
GATGCTGGGAAGCCGCCAGGGCGGTGGCCAGCAGCAAGGCGGCTACGGCGGCGACGATGGTTATGGTGAAAGCAGCTATC
AGGCTCCCAGCCGTCCAGCTCCCGCGCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTTCTGCTCCTGCT
CCCATGGCCCCTCCTCCCCAGCGCGCTGCGTCGGGGTTTGACGATATGGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.25

100

0.593
  ssb Glaesserella parasuis strain SC1401

50.51

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.505

100

0.445

Multiple sequence alignment