Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACJJWD_RS01010 Genome accession   NZ_CP174505
Coordinates   235606..237144 (+) Length   512 a.a.
NCBI ID   WP_407714815.1    Uniprot ID   -
Organism   Comamonas testosteroni strain VSPL.dLG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 230606..242144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJWD_RS00990 (ACJJWD_00995) - 231345..232673 (-) 1329 WP_407714812.1 sulfatase -
  ACJJWD_RS00995 (ACJJWD_01000) - 232787..233779 (-) 993 WP_407716214.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  ACJJWD_RS01000 (ACJJWD_01005) - 233909..234880 (-) 972 WP_407714813.1 tripartite tricarboxylate transporter substrate binding protein -
  ACJJWD_RS01005 (ACJJWD_01010) - 234973..235521 (+) 549 WP_407714814.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACJJWD_RS01010 (ACJJWD_01015) comM 235606..237144 (+) 1539 WP_407714815.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACJJWD_RS01015 (ACJJWD_01020) - 237154..238083 (-) 930 WP_407714817.1 LysR substrate-binding domain-containing protein -
  ACJJWD_RS01020 (ACJJWD_01025) - 238194..239375 (+) 1182 WP_050872994.1 YbfB/YjiJ family MFS transporter -
  ACJJWD_RS01025 (ACJJWD_01030) - 239410..240477 (+) 1068 WP_407714818.1 NAD(P)H-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54928.85 Da        Isoelectric Point: 7.8517

>NTDB_id=1077446 ACJJWD_RS01010 WP_407714815.1 235606..237144(+) (comM) [Comamonas testosteroni strain VSPL.dLG]
MGLALVQSRALLGLQAPGVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLQFPNNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAQRLADYEFAGELSLTGALRPVRGALATALALQRQQHRVRLVLPPDSAQEAAFVPAIEVFSA
AHLLDVVRQFIAHDATLAEQGDDVEGWQRVHSRPAEASLQSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFARLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSIALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGYWGSRIRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPQELLAAPEGESSAAVQQRVSAARDKALQRQGLPNHQLQGVQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLAGSDSITQAHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=1077446 ACJJWD_RS01010 WP_407714815.1 235606..237144(+) (comM) [Comamonas testosteroni strain VSPL.dLG]
ATGGGTCTGGCTCTGGTTCAAAGTCGTGCCTTGCTGGGCTTGCAGGCACCAGGCGTCACTGTGGAGGTCCATCTGGCCAA
CGGCCTGCCTTCGTTCACCCTGGTGGGCCTGGCGGATGTGGAGGTCAAGGAGGCACGCGAGCGTGTGCGCGCGGCCATCG
TCAATGCGGGGCTGCAGTTCCCGAACAACCAGCGCATCACGGTCAACCTGGCTCCGGCAGACCTTCCCAAGGACTCTGGC
CGCTTTGACCTGCCGATAGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATCGATGCTCAGCGGCTTGCCGACTATGAGTT
TGCGGGTGAGCTGTCCCTCACCGGTGCGCTGCGCCCGGTGCGCGGGGCCCTGGCAACGGCGCTGGCCTTGCAGCGTCAGC
AGCACCGCGTGCGGCTGGTGCTGCCGCCGGACAGTGCGCAGGAGGCCGCCTTCGTGCCGGCCATCGAAGTCTTCAGCGCT
GCGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACGCCACCCTGGCGGAGCAAGGCGATGACGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGAAGCCTCCTTGCAGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCACATGGTGTGCTGATGATCGGCCCTCCGGGTTCGGGAAAATCCATGCTG
GCCCAGCGCTTTGCCCGCTTGCTGCCGGGCATGACCGACGAGGAAGCGCTCGAAGCCGCAGCCATTGCCAGCCTCAGCGG
CCGTTTCACGCCGCAGCTGTGGCGCCAGCGACCGTTTGCCGCGCCTCATCACACGGCCAGCTCCATTGCGCTGGTCGGCG
GCGGCTCTCCGCCCCGGCCTGGCGAAATCTCCTATGCCCATTGCGGGGCGCTTTTCCTGGACGAGTTGCCCGAGTTCGCG
CGCAGCGCCCTGGAGGCCCTGCGCGAGCCGCTGGAGACCGGGCGCATCACCATCGTGCGGGCCGTGCAGAGGGCGGAGTT
TCCCGCCCGTTTCCAGCTGGTGGCCGCCATGAACCCCTGCCCCTGCGGCTACTGGGGATCGCGCATCAGGGCCTGCCGCT
GCTCGCCCGATCAGGTGGCGCGTTATCAGGCGCGCATCAGCGGGCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCGCAGGAGCTGCTGGCAGCGCCCGAGGGCGAGAGCAGCGCTGCCGTGCAGCAACGCGTGAGTGCGGC
CAGGGACAAGGCCTTGCAGCGCCAGGGCCTGCCCAACCATCAGTTGCAGGGGGTGCAGCTCGACACGCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCACACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCGCGCGGCACGCACCGGGCCCTGAAG
GTGGCGCGCACCATTGCCGATCTGGCTGGCTCTGATTCCATCACGCAGGCCCATCTGGCCGAGGCCTTGCAATACCGCCG
TGCGCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.918

100

0.531
  comM Vibrio campbellii strain DS40M4

51.765

99.609

0.516
  comM Haemophilus influenzae Rd KW20

51.277

99.414

0.51
  comM Glaesserella parasuis strain SC1401

49.805

100

0.498
  comM Legionella pneumophila str. Paris

47.217

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.217

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

99.609

0.432

Multiple sequence alignment