Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACJJU9_RS25395 Genome accession   NZ_CP174501
Coordinates   5632880..5634373 (+) Length   497 a.a.
NCBI ID   WP_153331481.1    Uniprot ID   -
Organism   Pseudomonas helleri strain NF1a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5627880..5639373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJU9_RS25375 (ACJJU9_25375) - 5628440..5629168 (-) 729 WP_048372545.1 amino acid ABC transporter permease -
  ACJJU9_RS25380 (ACJJU9_25380) - 5629280..5630176 (-) 897 WP_407729792.1 amino acid ABC transporter substrate-binding protein -
  ACJJU9_RS25385 (ACJJU9_25385) - 5630230..5631432 (-) 1203 WP_407729793.1 pyridoxal phosphate-dependent aminotransferase -
  ACJJU9_RS25390 (ACJJU9_25390) kdgD 5631792..5632703 (+) 912 WP_048372539.1 5-dehydro-4-deoxyglucarate dehydratase -
  ACJJU9_RS25395 (ACJJU9_25395) comM 5632880..5634373 (+) 1494 WP_153331481.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACJJU9_RS25400 (ACJJU9_25400) - 5634385..5635305 (-) 921 WP_048372535.1 LysR substrate-binding domain-containing protein -
  ACJJU9_RS25405 (ACJJU9_25405) - 5635458..5636828 (+) 1371 WP_048372533.1 NorM family multidrug efflux MATE transporter -
  ACJJU9_RS25410 (ACJJU9_25410) - 5637012..5638682 (-) 1671 WP_407729794.1 putative bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52902.20 Da        Isoelectric Point: 7.8490

>NTDB_id=1077382 ACJJU9_RS25395 WP_153331481.1 5632880..5634373(+) (comM) [Pseudomonas helleri strain NF1a]
MSLAIVYSRAQVGVEAPVVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAIINSSLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPIKALEQVECLGELALSGAIRPVQGVLPAALAARAAGRVLVVPLANAEEACLASGLTVIAVEHL
LQAVAHFAGRAVIEPYVASGLLHVSKPYPDLSDVQGQLSAKRALLIAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLNE
QEALEVAAIQSVASHVPLSCWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARARDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVARETTALNPPLAS
ADTTANAAGLVAAARERQLQRQGCTNAFLDLPGVRAQCTLTDVDNTWLETACERMTLSLRAAHRLLKVARTLADLEQVES
IERKHLAEALQYRPASG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1077382 ACJJU9_RS25395 WP_153331481.1 5632880..5634373(+) (comM) [Pseudomonas helleri strain NF1a]
ATGTCTCTGGCGATTGTGTATAGCCGCGCCCAAGTGGGCGTCGAGGCGCCCGTGGTGACGGTCGAAGCGCATCTGGCCAA
TGGGTTGCCCGCGCTGACCTTGGTCGGGCTGCCGGAAACCGCGGTCAAAGAAAGCAAAGACCGGGTCCGCAGCGCGATTA
TCAATTCCAGCCTGGAGTTTCCCGCGCGTCGTATCACCCTCAATCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCCATCGCGCTGGGCATTCTGGCCGCCAGCGGGCAACTGCCCATCAAGGCGCTGGAGCAAGTGGAGTGTTT
GGGTGAGTTGGCGCTGTCGGGGGCCATTCGGCCCGTGCAGGGCGTGTTGCCTGCCGCATTGGCGGCGCGGGCGGCGGGCC
GGGTTTTGGTGGTGCCGCTGGCGAACGCCGAGGAGGCATGTCTGGCCTCGGGGCTGACGGTGATCGCGGTCGAGCATTTG
CTCCAAGCCGTGGCGCATTTTGCTGGCCGCGCGGTGATTGAACCCTATGTGGCCAGCGGCCTGCTGCACGTGAGCAAACC
GTATCCCGATTTGAGTGATGTGCAGGGCCAACTGTCGGCCAAGCGGGCGCTGTTGATCGCCGCCGCAGGCAGCCACAATC
TGCTTTTTACCGGGCCGCCGGGCACCGGTAAAACCTTGCTGGCCAGCCGCCTGCCCGGTTTGCTGCCGCCGCTCAACGAG
CAAGAGGCGCTGGAAGTGGCGGCCATCCAGTCAGTGGCCAGCCATGTGCCGCTGAGCTGCTGGCCGCAGCGCCCGTTTCG
TCAGCCGCACCATTCGGCCTCCGGCCCGGCGCTGGTGGGCGGCGGCTCAAAACCGCAGCCTGGCGAAATCACCCTGGCGC
ACCACGGGGTGTTGTTTCTGGATGAACTGCCCGAGTTCGACCGTAAAGTCCTCGAAGTGCTCAGAGAACCCATGGAATCT
GGTTTTATCGTGATCGCCCGTGCGCGGGACCGCATGCGCTTTCCGGCGCGCTTTCAACTGGTCGCCGCCATGAATCCCTG
CCCGTGTGGTTATTTGGGGGAGCCGACGGGGCGCTGTCGCTGCACCCCGGAACAGGTCCAGCGCTACCGCAACAAACTCT
CCGGGCCGCTGCTCGACCGGATTGACCTGCACCTGACCGTGGCCCGTGAAACCACCGCACTCAACCCCCCGCTCGCCTCG
GCAGACACCACCGCCAACGCCGCTGGACTCGTCGCGGCGGCGCGCGAGCGCCAGTTACAACGCCAAGGCTGTACCAATGC
GTTTCTCGACCTGCCCGGCGTTAGAGCCCAGTGCACCCTGACTGACGTGGACAACACCTGGCTGGAAACCGCATGCGAAC
GCATGACCTTGTCACTCAGGGCCGCGCACCGTTTATTGAAAGTGGCGCGCACATTGGCGGACCTGGAACAGGTTGAATCC
ATTGAACGCAAGCACCTGGCGGAGGCGTTGCAGTACCGGCCAGCCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.949

99.598

0.547
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Haemophilus influenzae Rd KW20

54

100

0.543
  comM Glaesserella parasuis strain SC1401

53.493

100

0.539
  comM Legionella pneumophila str. Paris

48.387

99.799

0.483
  comM Legionella pneumophila strain ERS1305867

48.387

99.799

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.135

100

0.447

Multiple sequence alignment