Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJD0W_RS13390 Genome accession   NZ_CP174456
Coordinates   2933219..2933761 (-) Length   180 a.a.
NCBI ID   WP_010450507.1    Uniprot ID   A0A7Y3ZB07
Organism   Vibrio rotiferianus strain BD182406     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2928219..2938761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS13370 - 2928564..2928872 (-) 309 WP_373854454.1 MSHA biogenesis protein MshK -
  ACJD0W_RS13375 gspM 2928889..2929539 (-) 651 WP_407832509.1 type II secretion system protein GspM -
  ACJD0W_RS13380 - 2929536..2930984 (-) 1449 WP_071236272.1 PilN domain-containing protein -
  ACJD0W_RS13385 csrD 2930987..2933002 (-) 2016 WP_407832510.1 RNase E specificity factor CsrD -
  ACJD0W_RS13390 ssb 2933219..2933761 (-) 543 WP_010450507.1 single-stranded DNA-binding protein Machinery gene
  ACJD0W_RS13395 qstR 2934039..2934683 (+) 645 WP_010450508.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACJD0W_RS13400 galU 2934783..2935655 (+) 873 WP_010450509.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACJD0W_RS13405 uvrA 2935793..2938615 (+) 2823 WP_407832511.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20044.10 Da        Isoelectric Point: 4.9269

>NTDB_id=1077134 ACJD0W_RS13390 WP_010450507.1 2933219..2933761(-) (ssb) [Vibrio rotiferianus strain BD182406]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQNGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQQGGWGQPQQPAQQQYNAPQQQPQQQAP
QQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1077134 ACJD0W_RS13390 WP_010450507.1 2933219..2933761(-) (ssb) [Vibrio rotiferianus strain BD182406]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTTGGTAACGACCCTGAAATTCGTTACATGCCTAACGG
TGGTGCTGTAGCAAACATCACGATTGCAACTTCAGAGTCATGGCGTGACAAAGCGACTGGTGAACAGCGTGAAAAAACAG
AGTGGCACCGTGTGGCTTTGTTTGGAAAATTGGCTGAAGTAGCTGGTGAGTACCTGCGCAAAGGCTCTCAGGTTTACGTT
GAAGGTCAACTTCAAACACGTAAATGGCAAGACCAAAATGGTCAAGACCGCTATACGACAGAAGTTGTTGTTCAAGGATT
CAACGGCGTTATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGCGCACCGATGGGTGGTGGTCAGCAACAGCAGCAACAAC
AAGGTGGTTGGGGTCAACCTCAGCAACCTGCTCAGCAGCAGTATAATGCTCCACAGCAGCAACCTCAACAACAGGCTCCG
CAGCAACCACAGCAGCAATACAATGAGCCGCCTATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y3ZB07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.806
  ssb Glaesserella parasuis strain SC1401

56.41

100

0.611
  ssb Neisseria meningitidis MC58

47.486

99.444

0.472
  ssb Neisseria gonorrhoeae MS11

47.486

99.444

0.472

Multiple sequence alignment