Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ACJD0W_RS13395 Genome accession   NZ_CP174456
Coordinates   2934039..2934683 (+) Length   214 a.a.
NCBI ID   WP_010450508.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain BD182406     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2929039..2939683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS13380 - 2929536..2930984 (-) 1449 WP_071236272.1 PilN domain-containing protein -
  ACJD0W_RS13385 csrD 2930987..2933002 (-) 2016 WP_407832510.1 RNase E specificity factor CsrD -
  ACJD0W_RS13390 ssb 2933219..2933761 (-) 543 WP_010450507.1 single-stranded DNA-binding protein Machinery gene
  ACJD0W_RS13395 qstR 2934039..2934683 (+) 645 WP_010450508.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACJD0W_RS13400 galU 2934783..2935655 (+) 873 WP_010450509.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACJD0W_RS13405 uvrA 2935793..2938615 (+) 2823 WP_407832511.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24727.64 Da        Isoelectric Point: 8.4513

>NTDB_id=1077135 ACJD0W_RS13395 WP_010450508.1 2934039..2934683(+) (qstR) [Vibrio rotiferianus strain BD182406]
MRKSAYARKLFLISLKQDESSQLTQLKKYADMDIPLIGIDDLMEANPKHRNKILLIDFEEHKDLILSIKNLPLVWKNFET
IIFNVPKRLTTDELLSFGQLKGLFYKEDSAENIAEGFKEIINGQNWLPRNVTSQLLHYYRNVVSSHTTPATVDLTIRELQ
VLRCLQAGASNCQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1077135 ACJD0W_RS13395 WP_010450508.1 2934039..2934683(+) (qstR) [Vibrio rotiferianus strain BD182406]
ATGAGAAAATCTGCTTATGCGAGAAAACTCTTTCTTATCAGCTTAAAACAAGATGAAAGTTCTCAGCTAACACAGCTGAA
GAAATATGCTGATATGGATATTCCTCTCATTGGTATTGATGACCTTATGGAAGCCAACCCTAAGCACCGCAATAAGATCT
TACTCATTGATTTTGAAGAACACAAAGACTTGATTCTTTCGATTAAGAATCTTCCATTAGTATGGAAGAACTTTGAAACA
ATCATATTTAACGTCCCAAAACGCCTAACTACGGACGAGTTACTCTCGTTCGGCCAGCTAAAAGGACTGTTCTATAAAGA
AGATAGTGCTGAAAATATCGCAGAGGGATTCAAAGAAATCATAAACGGCCAAAACTGGTTGCCTAGGAATGTCACGAGCC
AACTTTTGCACTACTATCGCAATGTCGTCAGCTCCCATACCACTCCAGCAACCGTTGACCTCACCATTCGCGAGTTACAA
GTTTTACGCTGTTTGCAAGCAGGAGCCTCCAATTGCCAGATGGCAGAAGAGTTATTTGTCAGTGAATTCACAATAAAGTC
GCACCTATACCAAATTTTTAAAAAGTTATCCGTCAAAAATCGGGTTCAAGCGATAGCATGGGCAGATCAGAATTTGCTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

82.243

100

0.822
  qstR Vibrio parahaemolyticus RIMD 2210633

81.308

100

0.813
  qstR Vibrio cholerae strain A1552

53.211

100

0.542

Multiple sequence alignment