Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | ACI6TB_RS09415 | Genome accession | NZ_CP174270 |
| Coordinates | 2076048..2076383 (-) | Length | 111 a.a. |
| NCBI ID | WP_012341067.1 | Uniprot ID | A0A9Q7E5D2 |
| Organism | Histophilus somni strain HSNMG-1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2071048..2081383
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI6TB_RS09395 (ACI6TB_09395) | serA | 2072071..2073303 (-) | 1233 | WP_012341062.1 | phosphoglycerate dehydrogenase | - |
| ACI6TB_RS09400 (ACI6TB_09400) | rpiA | 2073329..2073988 (-) | 660 | WP_406812273.1 | ribose-5-phosphate isomerase RpiA | - |
| ACI6TB_RS09405 (ACI6TB_09405) | hemW | 2074084..2075262 (-) | 1179 | WP_406812274.1 | radical SAM family heme chaperone HemW | - |
| ACI6TB_RS09410 (ACI6TB_09410) | rdgB | 2075262..2075858 (-) | 597 | WP_011608277.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| ACI6TB_RS09415 (ACI6TB_09415) | comE1/comEA | 2076048..2076383 (-) | 336 | WP_012341067.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| ACI6TB_RS09420 (ACI6TB_09420) | - | 2076605..2076994 (-) | 390 | WP_406812275.1 | RidA family protein | - |
| ACI6TB_RS09425 (ACI6TB_09425) | - | 2077055..2077636 (-) | 582 | WP_012341069.1 | aminotransferase class IV family protein | - |
| ACI6TB_RS09430 (ACI6TB_09430) | - | 2077785..2078792 (-) | 1008 | WP_249963125.1 | aminodeoxychorismate synthase component I | - |
| ACI6TB_RS09435 (ACI6TB_09435) | - | 2078849..2079418 (+) | 570 | WP_011608282.1 | anthranilate synthase component II | - |
| ACI6TB_RS09440 (ACI6TB_09440) | - | 2079571..2080050 (+) | 480 | WP_011608283.1 | Dps family protein | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12138.14 Da Isoelectric Point: 10.2041
>NTDB_id=1076673 ACI6TB_RS09415 WP_012341067.1 2076048..2076383(-) (comE1/comEA) [Histophilus somni strain HSNMG-1]
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
Nucleotide
Download Length: 336 bp
>NTDB_id=1076673 ACI6TB_RS09415 WP_012341067.1 2076048..2076383(-) (comE1/comEA) [Histophilus somni strain HSNMG-1]
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGTGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGTGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60.36 |
100 |
0.604 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.333 |
100 |
0.577 |
| comEA | Vibrio cholerae C6706 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio cholerae strain A1552 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio campbellii strain DS40M4 |
43.269 |
93.694 |
0.405 |