Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AABJ90_RS08430 Genome accession   NZ_AP028964
Coordinates   1627819..1628115 (+) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1622819..1633115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS08410 (BsubNA05_16180) yqhB 1622877..1624205 (-) 1329 WP_338382613.1 hemolysin family protein -
  AABJ90_RS08415 (BsubNA05_16190) corA 1624348..1625301 (+) 954 WP_338382614.1 magnesium transporter CorA -
  AABJ90_RS08420 (BsubNA05_16200) comGA 1625711..1626781 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  AABJ90_RS08425 (BsubNA05_16210) comGB 1626768..1627805 (+) 1038 WP_338382615.1 comG operon protein ComGB Machinery gene
  AABJ90_RS08430 (BsubNA05_16220) comGC 1627819..1628115 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AABJ90_RS08435 (BsubNA05_16230) comGD 1628105..1628536 (+) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  AABJ90_RS08440 (BsubNA05_16240) comGE 1628520..1628867 (+) 348 WP_080529537.1 ComG operon protein 5 Machinery gene
  AABJ90_RS08445 (BsubNA05_16250) comGF 1628893..1629276 (+) 384 WP_080529536.1 ComG operon protein ComGF Machinery gene
  AABJ90_RS08450 (BsubNA05_16260) comGG 1629277..1629651 (+) 375 WP_338382616.1 ComG operon protein ComGG Machinery gene
  AABJ90_RS08455 (BsubNA05_16270) spoIIT 1629723..1629902 (+) 180 WP_029726723.1 YqzE family protein -
  AABJ90_RS08460 (BsubNA05_16280) yqzG 1629944..1630270 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  AABJ90_RS08465 (BsubNA05_16290) tapA 1630542..1631303 (+) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  AABJ90_RS08470 (BsubNA05_16300) sipW 1631287..1631859 (+) 573 WP_003230181.1 signal peptidase I -
  AABJ90_RS08475 (BsubNA05_16310) tasA 1631923..1632708 (+) 786 WP_161476870.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=107581 AABJ90_RS08430 WP_003230162.1 1627819..1628115(+) (comGC) [Bacillus subtilis strain NA05 = NBRC 116153]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=107581 AABJ90_RS08430 WP_003230162.1 1627819..1628115(+) (comGC) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment