Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABWW32_RS10610 | Genome accession | NZ_AP028957 |
| Coordinates | 2286055..2286594 (+) | Length | 179 a.a. |
| NCBI ID | WP_002438358.1 | Uniprot ID | H5V742 |
| Organism | Atlantibacter hermannii strain VNF293 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2281055..2291594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWW32_RS10595 (VNF293_20550) | - | 2282183..2282605 (+) | 423 | WP_148051959.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ABWW32_RS10600 (VNF293_20560) | - | 2282602..2282955 (+) | 354 | WP_002438361.1 | MmcQ/YjbR family DNA-binding protein | - |
| ABWW32_RS10605 (VNF293_20570) | uvrA | 2282957..2285794 (-) | 2838 | WP_002438359.1 | excinuclease ABC subunit UvrA | - |
| ABWW32_RS10610 (VNF293_20580) | ssb | 2286055..2286594 (+) | 540 | WP_002438358.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ABWW32_RS10615 (VNF293_20590) | - | 2286901..2287245 (+) | 345 | WP_002433952.1 | hypothetical protein | - |
| ABWW32_RS10620 (VNF293_20600) | - | 2287280..2287558 (-) | 279 | WP_220397106.1 | YjcB family protein | - |
| ABWW32_RS10625 (VNF293_20610) | - | 2288132..2289529 (+) | 1398 | WP_353393963.1 | sensor domain-containing diguanylate cyclase | - |
| ABWW32_RS10630 (VNF293_20620) | - | 2289817..2291421 (+) | 1605 | WP_353393965.1 | EAL domain-containing protein | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19380.37 Da Isoelectric Point: 5.2358
>NTDB_id=107539 ABWW32_RS10610 WP_002438358.1 2286055..2286594(+) (ssb) [Atlantibacter hermannii strain VNF293]
MASRGVNKVILVGNLGQDPEVRYLPSGGAVANFTLATSDSWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQQAQGGNQFSGGAQSRPQQQQ
APASSNNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYLPSGGAVANFTLATSDSWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQQAQGGNQFSGGAQSRPQQQQ
APASSNNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=107539 ABWW32_RS10610 WP_002438358.1 2286055..2286594(+) (ssb) [Atlantibacter hermannii strain VNF293]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTATTTGCCAAGTGG
CGGCGCAGTCGCTAACTTCACGCTGGCTACTTCTGACTCCTGGCGCGATAAGCAAACCGGCGAAATGAAGGAACAGACTG
AGTGGCACCGCGTTGTGATGTTCGGCAAACTGGCTGAAGTGGCAGGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCTGGTCAGGAACGCTATACCACCGAGATTAACGTTCCACAAAT
CGGCGGCGTAATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCGCCGGCTGGCGGAGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGCAAGCTCAGGGCGGCAACCAGTTTAGCGGCGGCGCGCAATCACGTCCGCAGCAGCAACAG
GCGCCAGCTTCATCTAACAATGAGCCGCCAATGGACTTTGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTATTTGCCAAGTGG
CGGCGCAGTCGCTAACTTCACGCTGGCTACTTCTGACTCCTGGCGCGATAAGCAAACCGGCGAAATGAAGGAACAGACTG
AGTGGCACCGCGTTGTGATGTTCGGCAAACTGGCTGAAGTGGCAGGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCTGGTCAGGAACGCTATACCACCGAGATTAACGTTCCACAAAT
CGGCGGCGTAATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCGCCGGCTGGCGGAGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGCAAGCTCAGGGCGGCAACCAGTTTAGCGGCGGCGCGCAATCACGTCCGCAGCAGCAACAG
GCGCCAGCTTCATCTAACAATGAGCCGCCAATGGACTTTGACGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
71.196 |
100 |
0.732 |
| ssb | Glaesserella parasuis strain SC1401 |
58.378 |
100 |
0.603 |
| ssb | Neisseria meningitidis MC58 |
46.154 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.111 |
100 |
0.464 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.464 |
100 |
0.369 |