Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U3C44_RS21540 Genome accession   NZ_CP174016
Coordinates   4488507..4490027 (+) Length   506 a.a.
NCBI ID   WP_032662788.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 2023CK-01510     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4483507..4495027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3C44_RS21515 (U3C44_21525) ilvE 4485073..4486002 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  U3C44_RS21520 (U3C44_21530) ilvM 4486021..4486284 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  U3C44_RS21525 (U3C44_21535) ilvG 4486281..4487927 (-) 1647 WP_032662791.1 acetolactate synthase 2 catalytic subunit -
  U3C44_RS21530 (U3C44_21540) ilvX 4487930..4487980 (-) 51 WP_166792073.1 peptide IlvX -
  U3C44_RS21535 (U3C44_21545) ilvL 4488067..4488165 (-) 99 WP_071996002.1 ilv operon leader peptide -
  U3C44_RS21540 (U3C44_21550) comM 4488507..4490027 (+) 1521 WP_032662788.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U3C44_RS21545 (U3C44_21555) - 4490057..4490395 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  U3C44_RS21550 (U3C44_21560) hdfR 4490514..4491335 (+) 822 WP_032662787.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54911.96 Da        Isoelectric Point: 6.8204

>NTDB_id=1074099 U3C44_RS21540 WP_032662788.1 4488507..4490027(+) (comM) [Enterobacter asburiae strain 2023CK-01510]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSMSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQMRQYARQNKLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1074099 U3C44_RS21540 WP_032662788.1 4488507..4490027(+) (comM) [Enterobacter asburiae strain 2023CK-01510]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGTAA
CGGACTCCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATGCCTTCCCCGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATTATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGGCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGCTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCGGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACAATGCTGGCAAGCAGGTTAAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAGTTCGATGTCGTTGCAAAAACAGTGGCGCCGCCGTCCTTTTCG
TTCGCCGCATCATAGCGCTTCACTGACGGCAATGGTTGGCGGCGGGTCTATCCCCGGGCCGGGAGAGATCTCTCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGAGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCGCACGAGCAAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGGCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGTTATCTGGGCAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAGCGGGTGATTGCAGCCCAGATGCGGCAGTACGCTCGCCAGAACAAACTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGCTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGTTGAAGGTGGCCAGAACTATTGCCGACGTAGAGGGGTGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Vibrio campbellii strain DS40M4

58.929

99.605

0.587
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.379

100

0.445

Multiple sequence alignment