Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U3C44_RS01535 Genome accession   NZ_CP174016
Coordinates   324009..324539 (+) Length   176 a.a.
NCBI ID   WP_032662577.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 2023CK-01510     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 319009..329539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3C44_RS01515 (U3C44_01515) aphA 319333..320046 (+) 714 WP_032662578.1 acid phosphatase AphA -
  U3C44_RS01520 (U3C44_01520) - 320160..320576 (+) 417 WP_023310052.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U3C44_RS01525 (U3C44_01525) - 320579..320932 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  U3C44_RS01530 (U3C44_01530) uvrA 320936..323758 (-) 2823 WP_032639437.1 excinuclease ABC subunit UvrA -
  U3C44_RS01535 (U3C44_01535) ssb 324009..324539 (+) 531 WP_032662577.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U3C44_RS01540 (U3C44_01540) - 324602..324883 (-) 282 WP_008503385.1 YjcB family protein -
  U3C44_RS01545 (U3C44_01545) - 325530..327095 (+) 1566 WP_032662576.1 EAL domain-containing protein -
  U3C44_RS01550 (U3C44_01550) soxS 327102..327428 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  U3C44_RS01555 (U3C44_01555) soxR 327527..327985 (+) 459 WP_023310057.1 redox-sensitive transcriptional activator SoxR -
  U3C44_RS01560 (U3C44_01560) - 328362..329033 (+) 672 WP_032662574.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18822.84 Da        Isoelectric Point: 5.2456

>NTDB_id=1074082 U3C44_RS01535 WP_032662577.1 324009..324539(+) (ssb) [Enterobacter asburiae strain 2023CK-01510]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQTQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1074082 U3C44_RS01535 WP_032662577.1 324009..324539(+) (ssb) [Enterobacter asburiae strain 2023CK-01510]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCACCAGCAGGTGGCGGTCAGACCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364

Multiple sequence alignment