Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACI7YU_RS01905 Genome accession   NZ_CP173722
Coordinates   437166..438230 (+) Length   354 a.a.
NCBI ID   WP_041477568.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432166..443230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI7YU_RS01895 (ACI7YU_01895) - 432913..434181 (+) 1269 WP_016772053.1 malic enzyme-like NAD(P)-binding protein -
  ACI7YU_RS01900 (ACI7YU_01900) - 434502..436946 (-) 2445 WP_406229167.1 penicillin-binding protein 1A -
  ACI7YU_RS01905 (ACI7YU_01905) comM 437166..438230 (+) 1065 WP_041477568.1 pilus assembly protein PilM Machinery gene
  ACI7YU_RS01910 (ACI7YU_01910) - 438230..438796 (+) 567 WP_406228073.1 PilN domain-containing protein -
  ACI7YU_RS01915 (ACI7YU_01915) pilO 438793..439416 (+) 624 WP_041477570.1 type 4a pilus biogenesis protein PilO -
  ACI7YU_RS01920 (ACI7YU_01920) - 439413..439937 (+) 525 WP_406228075.1 pilus assembly protein PilP -
  ACI7YU_RS01925 (ACI7YU_01925) pilQ 439951..442029 (+) 2079 WP_406228076.1 type IV pilus secretin PilQ Machinery gene
  ACI7YU_RS01930 (ACI7YU_01930) aroK 442034..442552 (+) 519 WP_024011270.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38035.55 Da        Isoelectric Point: 4.7453

>NTDB_id=1073821 ACI7YU_RS01905 WP_041477568.1 437166..438230(+) (comM) [Pseudomonas siliginis strain P]
MLGLFNKKTNALLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPANAVVEKNIADLEGVGQALSRLLVKARTGVKSVAV
AVAGSAVITKVIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPDRVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATHLAASQERLTVAVVDIGATMTTLSVLHNGKIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLDTPTQVANP
FADMALGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1073821 ACI7YU_RS01905 WP_041477568.1 437166..438230(+) (comM) [Pseudomonas siliginis strain P]
GTGCTGGGACTCTTCAATAAAAAGACCAATGCGTTACTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTGGAACT
GAGCCGTCAGGGCGAGCGCTACCGGGTCGAGGCCTATGCGGTGGAGCCGTTGCCGGCGAACGCCGTGGTCGAAAAGAACA
TCGCCGACCTCGAAGGCGTCGGCCAGGCGCTGAGCCGGTTGCTGGTGAAAGCGCGAACCGGGGTCAAGAGCGTGGCGGTG
GCGGTGGCCGGTTCTGCGGTGATCACCAAGGTCATCGAGATGGACGCCGGGCTGTCTGACGACGAAATGGAAAACCAGCT
CAAGATCGAGGCCGACCAATACATTCCCTATCCGCTGGACGAAGTCGCCATCGATTTTGAAGTCCAGGGCGTCTCGCCGC
GCAACCCGGATCGGGTCAACGTGCTGCTTGCCGCCTGTCGCAAGGAAAACGTCGAGGTGCGTGAAGCGGCGCTGGCGCTC
GCCGGCCTGACCGCGCGGGTGGTGGACGTCGAGGCCTACGCCCTCGAGCGCTCGTTCGGTCTGCTGGCGACGCATCTGGC
GGCCTCCCAGGAGCGCCTGACCGTGGCGGTGGTCGACATCGGTGCGACGATGACCACCCTCAGCGTGCTGCACAACGGCA
AGATCATCTACACCCGTGAGCAATTATTCGGCGGACGCCAGCTTACCGAGGAGATCCAGCGCCGCTACGGCCTCACGGTC
GAACAGGCGGGCCTGGCGAAAAAACAGGGCGGGCTGCCTGACGATTACGTCAGCGAGGTCTTGCAGCCATTTCGCGAGGC
GCTGGTGCAGCAAGTCTCGCGTTCGCTGCAGTTCTTCTTCGCCTCCGGGCAGTACAACGCGGTCGACCATATCCTGTTGG
CCGGCGGCACCGCCTCGGTGCCCGGGCTGGACCGTCTGATCGAACAGCGTCTGGACACGCCGACGCAGGTCGCCAACCCA
TTCGCCGACATGGCCTTGGGCAGCAAGGTCAACGCAGGAGCGCTGGCCAGCGACGCGCCAGCCTTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

48.87

100

0.489

Multiple sequence alignment