Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AABA82_RS20840 Genome accession   NZ_AP028930
Coordinates   4701474..4701989 (+) Length   171 a.a.
NCBI ID   WP_331692405.1    Uniprot ID   -
Organism   Pandoraea sputorum strain THI4931     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4696474..4706989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA82_RS20830 (THI4931_41100) uvrA 4696895..4699759 (-) 2865 WP_039395612.1 excinuclease ABC subunit UvrA -
  AABA82_RS20835 (THI4931_41110) - 4700280..4701443 (+) 1164 WP_039395615.1 MFS transporter -
  AABA82_RS20840 (THI4931_41120) ssb 4701474..4701989 (+) 516 WP_331692405.1 single-stranded DNA-binding protein Machinery gene
  AABA82_RS20845 (THI4931_41130) - 4702203..4703411 (+) 1209 WP_338299165.1 glycosyltransferase -
  AABA82_RS20850 (THI4931_41140) - 4703422..4704123 (+) 702 WP_331692407.1 polysaccharide deacetylase family protein -
  AABA82_RS20855 (THI4931_41150) - 4704271..4706613 (+) 2343 WP_331692408.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17888.61 Da        Isoelectric Point: 5.3258

>NTDB_id=107381 AABA82_RS20840 WP_331692405.1 4701474..4701989(+) (ssb) [Pandoraea sputorum strain THI4931]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTERYSTEIVADQMQMLGGRSGGGEGGGGGGYSRGGGGDEGGGGGYSRGGGGGGGGGARQQAPAKQSGG
GFDDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=107381 AABA82_RS20840 WP_331692405.1 4701474..4701989(+) (ssb) [Pandoraea sputorum strain THI4931]
ATGGCATCAGTCAACAAAGTGATTCTGGTCGGCAATCTGGGTGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTTGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAGTCCGGCGAATTCAAGGAAATGACGGAATGGC
ACCGTGTGTCGTTCTTCGGCCGTCTGGCGGAGATCGTCAACGAGTACCTGAAGAAGGGTTCGTCGGTGTATATCGAAGGC
CGTATCCGTACGCGCAAGTACCAGGCGCAGGACGGCACGGAGCGCTACAGCACGGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGTGGCCGTAGCGGCGGCGGCGAAGGTGGCGGCGGTGGCGGCTACTCGCGCGGTGGTGGTGGTGACGAAGGCGGTG
GCGGCGGTTACTCGCGAGGCGGTGGCGGTGGCGGCGGCGGCGGTGCCCGTCAGCAAGCCCCGGCCAAGCAGTCCGGCGGC
GGCTTCGACGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.099

100

0.544
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.52
  ssb Neisseria meningitidis MC58

45

100

0.474
  ssb Neisseria gonorrhoeae MS11

45

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.43

100

0.392

Multiple sequence alignment