Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACF2G4_RS15950 Genome accession   NZ_CP173698
Coordinates   3412451..3412999 (+) Length   182 a.a.
NCBI ID   WP_243078789.1    Uniprot ID   -
Organism   Pantoea sp. C3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3407451..3417999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2G4_RS15935 (ACF2G4_15935) - 3407714..3408037 (+) 324 WP_215847894.1 MmcQ/YjbR family DNA-binding protein -
  ACF2G4_RS15940 (ACF2G4_15940) - 3408101..3409165 (-) 1065 WP_215847893.1 NAD(P)-dependent alcohol dehydrogenase -
  ACF2G4_RS15945 (ACF2G4_15945) uvrA 3409398..3412226 (-) 2829 WP_332626511.1 excinuclease ABC subunit UvrA -
  ACF2G4_RS15950 (ACF2G4_15950) ssb 3412451..3412999 (+) 549 WP_243078789.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACF2G4_RS15955 (ACF2G4_15955) - 3413074..3413595 (-) 522 WP_409075133.1 isochorismatase family protein -
  ACF2G4_RS15960 (ACF2G4_15960) - 3413724..3414551 (+) 828 WP_243078787.1 AraC family transcriptional regulator -
  ACF2G4_RS15965 (ACF2G4_15965) - 3414630..3415589 (+) 960 WP_215847888.1 DMT family transporter -
  ACF2G4_RS15970 (ACF2G4_15970) - 3416523..3416918 (-) 396 WP_215847887.1 transposase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19432.30 Da        Isoelectric Point: 5.2456

>NTDB_id=1073790 ACF2G4_RS15950 WP_243078789.1 3412451..3412999(+) (ssb) [Pantoea sp. C3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQGGSAGGAAPAGGGQSNNNNGWGQPQQPQGGGNQFSGGAQSRPQ
QQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1073790 ACF2G4_RS15950 WP_243078789.1 3412451..3412999(+) (ssb) [Pantoea sp. C3]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCCACGTCGGAAAGCTGGCGCGACAAACAAACCGGTGAAAATAAAGAGATCACCG
AATGGCACCGCGTCGTGCTGTTTGGCAAGTTGGCCGAAGTAGCCGGTGAATACCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGTACGCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACTACTGAAGTTGTGGTTAACGTAGG
CGGCACCATGCAAATGTTGGGTGGACGTCAAGGCGGCAGCGCTGGCGGAGCAGCACCTGCTGGCGGCGGACAAAGCAACA
ACAACAACGGTTGGGGCCAACCGCAGCAGCCACAGGGCGGCGGTAATCAGTTCAGCGGCGGCGCGCAATCTCGTCCGCAG
CAGCAGAGCGCACCTGCAAGCAACAATAATGAACCTCCAATGGATTTTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.351

100

0.725
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.577
  ssb Neisseria meningitidis MC58

46.369

98.352

0.456
  ssb Neisseria gonorrhoeae MS11

46.369

98.352

0.456

Multiple sequence alignment