Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACF2G4_RS13700 Genome accession   NZ_CP173698
Coordinates   2927795..2929315 (+) Length   506 a.a.
NCBI ID   WP_409074986.1    Uniprot ID   -
Organism   Pantoea sp. C3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2922795..2934315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2G4_RS13680 (ACF2G4_13680) - 2924367..2925296 (-) 930 WP_243079949.1 branched-chain amino acid transaminase -
  ACF2G4_RS13685 (ACF2G4_13685) ilvM 2925316..2925573 (-) 258 WP_215845274.1 acetolactate synthase 2 small subunit -
  ACF2G4_RS13690 (ACF2G4_13690) ilvG 2925570..2927216 (-) 1647 WP_215845273.1 acetolactate synthase 2 catalytic subunit -
  ACF2G4_RS13695 (ACF2G4_13695) ilvL 2927366..2927464 (-) 99 WP_082097622.1 ilv operon leader peptide -
  ACF2G4_RS13700 (ACF2G4_13700) comM 2927795..2929315 (+) 1521 WP_409074986.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACF2G4_RS13705 (ACF2G4_13705) - 2929338..2929676 (-) 339 WP_215845272.1 DUF413 domain-containing protein -
  ACF2G4_RS13710 (ACF2G4_13710) hdfR 2929798..2930622 (+) 825 WP_243079952.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55188.53 Da        Isoelectric Point: 7.1763

>NTDB_id=1073784 ACF2G4_RS13700 WP_409074986.1 2927795..2929315(+) (comM) [Pantoea sp. C3]
MSLSKVLTRAALGVEAPLVTIEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFNFPAKRITINLGPADLPKEGGR
YDLPMAIAILVASEQLPAEKLTQHEFLGELALDGALCRVQGAIPAAMAALEAGRQLILAVENQADVGLIRLGTSLVSPHL
LDVCAFLHNQCELTVAEPQDETPERFSEDLSDIIGQEQGRRALEITAAGGHNLMLIGPPGTGKTMLATRLPGIMPPLSDQ
EALECAAIASLANSGDLHQQWRKRPFRSPHHSASLYALIGGGSLPRPGEISLAHNGVLFLDELPEFERKVLDSLREPIES
GEIAISRARAKVTYPARFQLIAALNPSPTGHYQGQHNRCTPQQVLRYLSKLSGPFLDRFDLSLEVPLLPSGMLSQQRHAG
ETSAKVRERVLSARAVQIARAGKINAHMSNADIQCWCDIRKEDAEWLESVLNKLGLSVRAWQRILKVARTVADLAGEKDI
NRSHLQEALSYRSIDRLMIYLHKSLQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1073784 ACF2G4_RS13700 WP_409074986.1 2927795..2929315(+) (comM) [Pantoea sp. C3]
ATGTCATTGTCTAAAGTACTTACGCGTGCTGCATTGGGTGTGGAAGCACCATTAGTGACCATTGAAGTGCATATCAGTAA
TGGTTTGCCTGCATTGACATTAGTTGGCTTACCCGAGACGACGGTAAAAGAGGCCCGGGAGCGGGTTCGTAGCGCCATCA
TCAACAGCGGTTTTAACTTTCCAGCTAAACGTATCACCATCAATCTGGGCCCAGCCGATTTACCGAAAGAAGGCGGACGC
TATGACCTCCCGATGGCAATCGCCATTCTTGTGGCTTCTGAACAGCTTCCTGCCGAGAAATTGACTCAGCATGAGTTTCT
GGGGGAGTTAGCTCTTGATGGCGCGCTCTGTCGCGTTCAGGGCGCGATTCCGGCAGCAATGGCTGCGCTTGAAGCGGGTC
GTCAACTCATACTCGCTGTAGAGAATCAGGCAGATGTAGGACTTATCCGCTTGGGTACATCACTGGTTAGTCCGCATCTA
CTCGATGTCTGCGCTTTTTTGCATAATCAGTGTGAACTAACCGTAGCCGAACCGCAGGATGAAACACCCGAGCGTTTTAG
CGAAGATTTAAGTGACATCATTGGGCAGGAACAAGGCCGAAGAGCCTTAGAGATTACCGCTGCAGGCGGACATAATTTGA
TGTTAATTGGCCCGCCCGGTACGGGAAAGACCATGTTGGCCACGCGATTGCCAGGTATTATGCCACCGCTGAGCGATCAG
GAAGCACTGGAGTGTGCCGCTATCGCCAGCCTGGCCAACAGCGGTGATCTTCATCAGCAATGGCGTAAAAGGCCATTCAG
GTCCCCTCATCATAGCGCTTCGTTGTATGCGTTGATTGGGGGCGGTTCGCTACCTCGTCCAGGCGAAATTTCATTAGCGC
ACAATGGGGTGCTTTTTTTGGATGAACTTCCTGAGTTTGAACGAAAAGTTTTAGACTCATTACGCGAACCGATAGAATCT
GGCGAAATCGCCATATCTCGAGCCCGAGCGAAAGTGACCTATCCTGCTCGCTTTCAGCTTATCGCAGCGCTGAATCCTAG
CCCAACTGGCCATTACCAAGGCCAACATAATCGCTGCACACCTCAGCAAGTTTTACGGTATCTCAGTAAGCTTTCTGGGC
CCTTTCTCGATCGTTTTGATCTCTCGCTTGAAGTCCCTTTATTGCCAAGCGGGATGCTCAGCCAGCAACGTCACGCGGGT
GAAACATCTGCAAAAGTACGTGAGCGCGTTTTGTCAGCTCGAGCTGTACAGATTGCGCGTGCAGGAAAAATTAACGCTCA
TATGAGCAATGCGGATATACAGTGTTGGTGTGACATTCGGAAAGAGGATGCAGAGTGGCTTGAATCTGTACTGAATAAAC
TGGGCTTATCAGTACGAGCATGGCAACGGATTTTAAAAGTGGCGCGTACAGTGGCGGATCTGGCAGGAGAAAAGGATATT
AACCGAAGCCATTTGCAGGAAGCGCTGAGCTATCGCAGTATTGACAGGTTAATGATTTATCTTCATAAAAGCCTGCAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.437

99.407

0.601
  comM Glaesserella parasuis strain SC1401

60.437

99.407

0.601
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

47.782

98.024

0.468
  comM Legionella pneumophila strain ERS1305867

47.782

98.024

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.257

100

0.453

Multiple sequence alignment