Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACI3EV_RS00515 Genome accession   NZ_CP173677
Coordinates   119855..121387 (-) Length   510 a.a.
NCBI ID   WP_329771792.1    Uniprot ID   -
Organism   Brachymonas sp. G13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 114855..126387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3EV_RS00495 (ACI3EV_00495) - 115017..115442 (-) 426 WP_329771797.1 universal stress protein -
  ACI3EV_RS00500 (ACI3EV_00500) - 115555..116601 (+) 1047 WP_329771796.1 homocysteine S-methyltransferase family protein -
  ACI3EV_RS00505 (ACI3EV_00505) metH 116646..119399 (+) 2754 WP_329771795.1 methionine synthase -
  ACI3EV_RS00510 (ACI3EV_00510) - 119409..119768 (-) 360 WP_405198001.1 BLUF domain-containing protein -
  ACI3EV_RS00515 (ACI3EV_00515) comM 119855..121387 (-) 1533 WP_329771792.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACI3EV_RS00520 (ACI3EV_00520) - 121527..121745 (-) 219 WP_329771834.1 CsbD family protein -
  ACI3EV_RS00525 (ACI3EV_00525) - 121901..122608 (-) 708 WP_329771791.1 dienelactone hydrolase family protein -
  ACI3EV_RS00530 (ACI3EV_00530) - 122895..123653 (+) 759 WP_329771790.1 TorF family putative porin -
  ACI3EV_RS00535 (ACI3EV_00535) glnK 123711..124049 (+) 339 WP_329771788.1 P-II family nitrogen regulator -
  ACI3EV_RS00540 (ACI3EV_00540) - 124077..125399 (+) 1323 WP_337692118.1 ammonium transporter -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54251.12 Da        Isoelectric Point: 7.5438

>NTDB_id=1073646 ACI3EV_RS00515 WP_329771792.1 119855..121387(-) (comM) [Brachymonas sp. G13]
MSLAFVPSRALLGLEAPPVMVEVHLAPGLPSFTLVGLADTEVKEARERVRCAIQNAGLDFPHNRRITVNLAPADLPKDSG
RFDLPIAMGILAASDQVDASRLADHVFAGELSLSGELKPVRGALAMAAAHCQQGDSAALVLPHDSACEAALVPGLQVYGA
RTLGDVVQAFAPAGSQQELPEGWYRMQPDPARQSTPRYPDLADVKGQAAARRALEIAAAGQHSMLLLGPPGSGKSMLAQR
FAGLLPPMQPQQALAAAAVASLAGHFTPEQWGQRPMRSPHHTSSAVALVGGGSPPRPGEISLACHGTLFLDEIPEFPRPA
LEALREPLETGKIHISRAGRQAVFPAHFQLIAAMNPCPCGYLGSRIRPCRCTPDQVRRYQGKLSGPLLDRIDLQLEVQAL
PPEELLTASAGENSATVQQRVVAARERALQRQGSPNQLLEGLALEASAQLDGAASGFLQKAARQLGWSARSTHRTLRVAR
TIADLAESDSISIPHLAEAMQLRRGLLHQH

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1073646 ACI3EV_RS00515 WP_329771792.1 119855..121387(-) (comM) [Brachymonas sp. G13]
ATGTCCCTCGCCTTTGTCCCCAGTCGTGCCCTGCTCGGGCTGGAAGCGCCACCGGTCATGGTCGAGGTGCATCTGGCACC
CGGCCTGCCCAGTTTCACCCTGGTCGGGCTAGCCGATACCGAGGTCAAGGAAGCGCGTGAACGCGTGCGTTGCGCGATCC
AGAATGCCGGACTGGACTTTCCGCACAACCGGCGCATCACGGTCAATCTGGCTCCGGCCGACCTGCCCAAGGATTCCGGC
CGCTTCGACCTGCCGATCGCCATGGGGATTCTGGCGGCCAGCGACCAGGTCGATGCGAGTCGGCTGGCGGATCATGTGTT
TGCCGGTGAGCTGTCGCTGTCCGGCGAGCTGAAGCCGGTACGCGGCGCGCTCGCCATGGCGGCCGCGCATTGCCAGCAGG
GCGATTCCGCCGCGCTGGTCCTGCCGCACGACAGCGCCTGCGAGGCCGCGCTGGTGCCCGGCCTGCAGGTCTATGGCGCC
CGCACGCTGGGTGATGTGGTGCAGGCCTTTGCGCCCGCTGGATCACAACAGGAACTGCCTGAAGGCTGGTACCGCATGCA
GCCGGATCCGGCACGCCAGTCCACGCCGCGCTATCCGGATCTGGCCGATGTGAAAGGCCAGGCCGCAGCGCGCCGGGCAT
TGGAGATTGCCGCCGCCGGCCAGCATTCGATGCTGCTGCTGGGCCCGCCAGGATCGGGCAAGTCCATGCTGGCACAGCGC
TTTGCCGGCCTGCTGCCACCGATGCAGCCGCAACAGGCGCTGGCTGCCGCGGCCGTGGCCAGCCTGGCCGGACACTTCAC
GCCAGAGCAGTGGGGGCAGCGGCCGATGCGCTCGCCGCACCACACTTCCAGTGCGGTGGCATTGGTCGGTGGTGGCTCAC
CCCCACGCCCTGGCGAGATCTCGCTCGCTTGCCACGGCACACTATTTCTCGACGAGATCCCCGAATTTCCACGCCCCGCA
CTGGAGGCCTTGCGCGAGCCATTGGAGACCGGAAAAATCCATATCTCGCGCGCCGGCCGGCAAGCGGTGTTTCCGGCGCA
CTTCCAGCTGATCGCCGCGATGAATCCCTGCCCCTGCGGCTATCTGGGCAGCCGCATCCGGCCCTGCCGCTGTACGCCAG
ACCAGGTACGGCGTTACCAGGGCAAACTTAGCGGCCCCTTGCTGGACCGGATCGACCTGCAACTGGAAGTGCAGGCCTTG
CCACCCGAAGAGCTGCTGACCGCCAGCGCCGGAGAGAACAGTGCCACCGTGCAGCAACGCGTGGTGGCAGCACGCGAGCG
CGCCCTGCAGCGTCAGGGCAGCCCGAACCAGTTGCTGGAGGGGCTGGCACTGGAAGCCAGTGCGCAGCTCGATGGCGCCG
CCAGCGGCTTTCTGCAGAAGGCGGCACGCCAACTCGGCTGGAGTGCGCGCAGCACGCATCGCACCCTGCGCGTGGCGCGC
ACGATTGCCGACCTGGCCGAAAGTGACAGCATCTCGATTCCGCATCTGGCCGAGGCCATGCAATTGCGGCGCGGATTGCT
GCACCAGCATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-503)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.787

99.608

0.506
  comM Haemophilus influenzae Rd KW20

50.69

99.412

0.504
  comM Glaesserella parasuis strain SC1401

49.318

100

0.496
  comM Vibrio campbellii strain DS40M4

49.901

99.412

0.496
  comM Legionella pneumophila strain ERS1305867

48.824

100

0.488
  comM Legionella pneumophila str. Paris

48.824

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.373

100

0.414

Multiple sequence alignment