Detailed information NTG1073251

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ACI51X_RS01005
• Genome accession: NZ_CP173623
• Coordinates: 234809..236335 (-)
• Length: 508 a.a.
• NCBI ID: WP_116362551.1
• Uniprot ID: -
• Organism: Pectobacterium versatile strain M10
• Function: require for natural transformation (predicted from homology) Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	233563..234738	234809..236335	flank	71

Gene organization within MGE regions

Location: 233563..236335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI51X_RS01000 (ACI51X_01000)	-	233563..234738 (+)	1176	WP_405081330.1	IS4 family transposase	-
ACI51X_RS01005 (ACI51X_01005)	comM	234809..236335 (-)	1527	WP_116362551.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55411.02 Da
• Isoelectric Point: 6.6199

>NTDB_id=1073251 ACI51X_RS01005 WP_116362551.1 234809..236335(-) (comM) [Pectobacterium versatile strain M10]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMALIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPQIGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTHWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLTARQIQLKRANKINALLTSREIEKHCGLEMADAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide

• Length: 1527 bp

>NTDB_id=1073251 ACI51X_RS01005 WP_116362551.1 234809..236335(-) (comM) [Pectobacterium versatile strain M10]
ATGTCATTGGCAGTTACCTATACTAGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGTTTACCTGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACGTTTCCAGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAAATGGCGCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGTTCCGACATGACGCCCGTTCCACAGATAGGGGA
AGATACGCTCGACTTGAAAGATATCATCGGTCAGGAGCAAGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGTCATA
ACCTGCTCTTGCTAGGACCACCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCGCCGTTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCACTGGCGGGCTAGGCC
ATTCAGAGCGCCTCACCATAGTTCCTCGATGGCTGCACTCGTGGGCGGAGGGTCGCTGCCCAAACCTGGAGAAATCTCGC
TCGCCCACAATGGAGTGCTGTTTCTGGATGAATTACCAGAGTTTGAGCGGCGCGTCCTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACGCGGGCCAAAGTATGCTACCCAGCACGCGTCCAGCTCGTTGCCGCAATGAA
TCCCAGTCCATCAGGACACTATCAGGGCATTCATAACCGATTGCCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACATTAT
CAAGGCGAAAGTAGCGCGACGATTCGCGAACGCGTGCTGACCGCACGGCAAATACAGCTGAAGCGCGCAAATAAAATCAA
CGCACTGCTCACTTCACGCGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGGCCTATCTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCGTGGCACAGGATATTGAAAGTCGCGCGCACGATCGCTGACCTCGGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	64.427	99.606	0.642
comM	Vibrio cholerae strain A1552	64.414	99.016	0.638
comM	Glaesserella parasuis strain SC1401	63.065	100	0.632
comM	Vibrio campbellii strain DS40M4	62.846	99.606	0.626
comM	Legionella pneumophila str. Paris	50.701	98.228	0.498
comM	Legionella pneumophila strain ERS1305867	50.701	98.228	0.498
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.498	100	0.47