Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACI512_RS02180 Genome accession   NZ_CP173614
Coordinates   438457..439953 (+) Length   498 a.a.
NCBI ID   WP_236379979.1    Uniprot ID   -
Organism   Pseudomonas petroselini strain M14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433457..444953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI512_RS02145 (ACI512_02140) - 433577..434272 (+) 696 WP_046034876.1 HAD family hydrolase -
  ACI512_RS02150 (ACI512_02145) sutA 434457..434783 (-) 327 WP_015886504.1 transcriptional regulator SutA -
  ACI512_RS02155 (ACI512_02150) - 434887..435312 (-) 426 WP_046034875.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACI512_RS02160 (ACI512_02155) - 435524..436864 (-) 1341 WP_015886506.1 ammonium transporter -
  ACI512_RS02165 (ACI512_02160) glnK 436899..437237 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACI512_RS02170 (ACI512_02165) - 437659..437919 (+) 261 WP_010207460.1 accessory factor UbiK family protein -
  ACI512_RS02175 (ACI512_02170) - 437929..438363 (+) 435 WP_236379981.1 hypothetical protein -
  ACI512_RS02180 (ACI512_02175) comM 438457..439953 (+) 1497 WP_236379979.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACI512_RS02185 (ACI512_02180) - 440025..442001 (-) 1977 WP_015886510.1 methyl-accepting chemotaxis protein -
  ACI512_RS02190 (ACI512_02185) - 442179..443099 (-) 921 WP_015886511.1 LysR substrate-binding domain-containing protein -
  ACI512_RS02195 (ACI512_02190) - 443252..444655 (+) 1404 WP_093542646.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53497.89 Da        Isoelectric Point: 8.2605

>NTDB_id=1073179 ACI512_RS02180 WP_236379979.1 438457..439953(+) (comM) [Pseudomonas petroselini strain M14]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLMDRIDLHLTVARETTALNPIQQA
GDNTAKASAEVAEARERQLRRQGCANAFLDLPGLRRHCTLAKVDEGWLETACERLTLSLRAAHRLLKVARTLADLEQVDA
ITRDHLKEALQYRPAAIT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1073179 ACI512_RS02180 WP_236379979.1 438457..439953(+) (comM) [Pseudomonas petroselini strain M14]
ATGTCCCTCGCCATTGTCCACAGCCGCGCCCAGATCGGCGTCGAAGCCCCTGCCGTCACCGTCGAAGTGCACATGGCCAA
TGGTCTGCCGTCGCTGACGCTGGTGGGCTTGCCGGAAACGGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCGATCC
TCAACTCCGCGCTTCAATACCCGTCCCGCCGCATCACCCTCAACCTCGCGCCCGCCGACTTGCCCAAAGACGGCGGGCGT
TTTGACTTGGCGATTGCCCTGGGGATCCTGGCCGCCAGCGTGCAGGTGCCGGCGCTGATGCTCGATGACGTGGAGTGCCT
TGGGGAGTTGGCGCTGTCCGGTGAAGTCCGGGCGGTGAAAGGTGTGTTGCCGGCCGCATTGGCGGCACGCAAGGCCGGGC
GTACCCTGATAGTGCCGCGGGCGAATGCCGAGGAGGCGTGCCTGGCTTCAGGGTTGAAGGTGATCGCGGTGGATCACTTG
CTGCAGGTGGTGGCGCACTTGAATGGGCATGTGCCGATTGAACCGTATAAGTCCGACGGCTTGCTGTACTTGAATAAGCC
GTATCCAGACCTGAGTGAAGTCCAGGGCCAACTGGCGGCCAAGCGCGCGCTGCTGATCGCAGCGGCGGGCGCGCATAACC
TGCTGTTCAGTGGGCCGCCGGGCACGGGAAAGACGTTGCTCGCCAGCCGACTGCCGGGGTTGTTGCCACCCCTGAGTGAA
CAGGAGGCGTTGGAAGTGGCTGCGATTCAGTCGGTCGTCAGCCTGGCGCCGCTGAGCCATTGGCCGCACCGGCCGTTTCG
CCAGCCACACCATTCCGCCTCAGGGCCAGCGCTGGTGGGAGGCGGCTCCAAACCGCAGCCGGGGGAGATCACCCTGGCCC
ATCACGGGGTGCTGTTCCTGGATGAGCTGCCGGAATTTGATCGCAAAGTGCTGGAGGTACTGCGTGAACCCTTGGAGTCG
GGGCATATCGTGATCTCCCGCGCCCGTGACCGAGTGAGTTTCCCGGCGCGCTTTCAACTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGTGAACCCAGTGGGCGCTGTCGCTGTACGCCGGAGCAAATTCAGCGCTATCGCAACAAGCTGT
CCGGGCCGTTGATGGATCGCATCGACCTGCACCTGACCGTTGCTCGGGAAACCACTGCGCTGAATCCAATCCAGCAGGCC
GGCGATAACACAGCGAAGGCCTCGGCAGAGGTAGCCGAGGCACGGGAGCGCCAGTTGCGGCGTCAGGGCTGCGCGAATGC
CTTCCTTGACCTGCCTGGGCTACGCCGTCACTGCACGCTGGCAAAGGTCGATGAAGGCTGGCTGGAGACCGCCTGCGAGC
GATTGACTCTGTCGCTGCGTGCGGCGCATCGGCTGCTCAAGGTGGCGCGGACCCTGGCGGACCTGGAGCAGGTAGATGCC
ATCACGCGCGACCATCTGAAGGAAGCCTTGCAATACCGACCGGCGGCGATCACTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Vibrio cholerae strain A1552

55.758

99.398

0.554
  comM Glaesserella parasuis strain SC1401

54.8

100

0.55
  comM Haemophilus influenzae Rd KW20

54.6

100

0.548
  comM Legionella pneumophila str. Paris

50.806

99.598

0.506
  comM Legionella pneumophila strain ERS1305867

50.806

99.598

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.726

100

0.462

Multiple sequence alignment